Tag: refCDS

AssemblyMAFFromAnchorWavePlugin IndexOutOfBoundsException

AssemblyMAFFromAnchorWavePlugin IndexOutOfBoundsException 0 Hello, I’m attempting to create a test database with a smaller genome just to confirm I can get the pipeline running. I’m using PHG 1.8 with singularity. I was able to successfully run MakeDefaultDirectoryPlugin, CreateValidIntervalsFilePlugin, and MakeInitialPHGDBPipelinePlugin. Running AssemblyMAFFromAnchorWavePlugin yields an “IndexOutOfBoundsException” error, but the cause is…

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