Tag: rip-md

How to depict edges as an indicator of no. of frames in which two residue interact in Residue interaction network using Cytoscape?

How to depict edges as an indicator of no. of frames in which two residue interact in Residue interaction network using Cytoscape? 1 I am using RIP-MD tool to generate Residue interaction network from MD trajectories. the tool generates GML files which I load in Cytoscape. I want to visualise…

Continue Reading How to depict edges as an indicator of no. of frames in which two residue interact in Residue interaction network using Cytoscape?

Has anybody used RIP-MD tool for generation of RIN from MD trajectories?

Has anybody used RIP-MD tool for generation of RIN from MD trajectories? 0 I have been trying to use the RIP-MD tool for generating residue interaction networks from pdb file and MD trajectories. I have tried installing the VMD plugin and running the files through that for the same. But…

Continue Reading Has anybody used RIP-MD tool for generation of RIN from MD trajectories?