Tag: Rstudio

I’m writing a small package of functions for myself only (not CRAN; on GitHub, but not public), and developing locally on the computer. Mostly this is me being a newbie at R and learning to write first package. I’m using devtools and after load_all() and check(), I have been getting…

The Laboratory of Cancer Epigenetic Regulation, helmed by GIS Executive Director Patrick Tan, is seeking a Bioinformatician to join a new multi-institutional effort targeting the genetic basis of cancer to create novel therapies and diagnostics. Led by an award-winning thought leader in the field of Asian gastrointestinal cancer research with…

   Graphs to Produce:Bar Plot: (Use dataset_student_survey_data.csv)x=Smokefill=Exerposition=dodgefacet=Sexx-label=Smokery-label=Countstitle=The Exercise habits of Male and Female students that smokeHistogram: (Use dataset_us_car_price_data.csv)x=Pricefill=Typefacet=Typex-label=Pricey-label=Freqtitle=Car Price Distribution based on Car TypeBox Plot: (Use dataset_production_of_rice_in_india.csv)x=varietiesy=pricefill=bimasfacet=statusx-label=Rice Varietiesx-label=Pricetitle=India Rice Prices based on Varieties, Land Status, and Bimas ProgramScatter Plot: (Use dataset_production_of_rice_in_india.csv)x=pricey=wageshape=bimascol=bimasfacet=statusmethod=lmse=Fx-label=Rice Pricey=Wagetitle=India Rice Prices vs Wage broken down by Land…

Are you learning the R programming language? Want to learn how to do more tasks with R? Check out our Do More With R video tutorials below — most with accompanying text articles and code, almost all under 10 minutes. In the table below you can easily search all tutorials…

Username or Email Password Forgot your password? Sign In Cancel by RStudio Sign in Register D.E. Analysis: Identifying Differentially-Expressed Genes between Experimental Groups by HH Last updated about 17 hours ago Hide Comments (–) Share Hide Toolbars × Post on: Twitter Facebook Google+ Or copy & paste this link into…

Unformatted text preview: CSL-487: Introduction to Data Science Lab BS(CS) – Semester 06 (Spring 2022) Abdullah Abdul Wahid BS(CS) 6B 02-134192-015 Lab 03: Installation & Introduction to RStudio and Basics 1. Access R Studio Cloud 2. R verses Python Debate 3. R Studio Desktop Installation 4. The R Studio Interface…

How to normalize biom table from qiime2 to edgeR on Rstudio? 0 Hi, I’m new in this of bioinformatics, I’m making a metagenome analysis of ITS region, then, I want to normalize my data, so i exported a biom table from qiime2 with taxonomic annotations, and then I converted that…

Unformatted text preview: Simple linear regression Contents R and Rstudio 1 The basics 1 Fitting regression lines . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ….

RStudio does not exectute the normal install.packages but instead does its own thing: look at the code in RStudio: > install.packages function (…) .rs.callAs(name, hook, original, …) <environment: 0x3e4b478> > .rs.callAs function (name, f, …) { withCallingHandlers(tryCatch(f(…), error = function(e) { cat(“Error in “, name, ” : “, e$message, “\n”,…

[This article was first published on R | Ben Johnston, and kindly contributed to R-bloggers]. (You can report issue about the content on this page here) Want to share your content on R-bloggers? click here if you have a blog, or here if you don’t. R For SEO Part 3:…

Please use RSTUDIO!!!!! anal=read.csv(‘www.dropbox.com/s/wwls2s6rqnodpe5/anal painRed.txt?dl=1′,header=T,sep=’,’) attach(anal) Image transcription text 5) 3. Arthritis is a very commonly occurring amiction. It is a major cause of lost work time and often results in serious disability. Of the many types of arthritis, the most common type is osteoarthritis. This condition is frequently due…

I am trying to create a scatterplot in rstudio with my data. I am new to rstudio and having a lot of time understanding. The code I have found says plot(). This is what I used: plot(pa2_wti2$ï..Approving, pa2_wti2$ï..Price) Even when I tried a single it didn’t give me a scatter…

Good ay all, R-Ladies has another educational webinar on how to use Git. Gracielle Higino will cover foundations of version control, useful git commands and connections with RStudio. Saturday, April 30, 2022 10:00 AM to 11:30 AM SAST passcode:   000111 Gracielle is an open science enthusiast and advocate. Her research…

I just installed Bioconductor in RStudio 4.1.1: if (!requireNamespace(“BiocManager”, quietly = TRUE)) install.packages(“BiocManager”) I am currently trying to install GEOquery package from Bioconductor but it is throwing error messages and I don’t know what the problem is or how to fix it: BiocManager::install(“GEOquery”) Error Message: ‘getOption(“repos”)’ replaces Bioconductor standard repositories,…

Transcribed image text: Please solve the question in Rstudio codes with result. DO NOT solve on paper 1 1 3. (2 points) In homework 1, we looked at the bladder1 data from the survival package. > library (survival); head (bladderi, 10) id treatment number size recur start stop status rtumor…

A new version of pins is available on CRAN today, which adds support for versioning your datasets and DigitalOcean Spaces boards! As a quick recap, the pins package allows you to cache, discover and share resources. You can use pins in a wide range of situations, from downloading a dataset…

Part 1) Need help analyzing data and coming up with the most profitable portfolio possible Part 2) I need to get some simulations running as fast as possible. I have the code completely finished so I just need suggestions on how to make it better. Video available if needed. I…

The short answer: setRepositories(ind=1:2) tl;dr The documentation for setRepositories tells us that the “default list of known repositories is stored in the file ‘R_Home/etc/repositories’”. We can track this down a couple of ways, but for convenience, let’s read the table of repositories into R (this will cut off all of…

Download Free RStudio 2022.02.1+461 (Mac) – Download studio is an efficient and versatile user interface for the R programming language and runs on macOS, Linux and Windows. R is a free and open source programming language and environment for statistical computing and graphics that provides many graphics and statistical techniques….

. rprofile againI received a comment at A recent post and taught me how to send command from R console to terminal using system functions.Used.As described above, the following is described in the console of the upper left corner of rstudio. library(stats) library(tidyverse) library(ggplot2) library(GGally) library(patchwork) library(lubridate) library(dplyr) We named…

Dear Friends, I have been having considerable difficulty doing various package related bioconductor actions. Here is my system specifications: ======================================================================= macOS Monterey Version: 12.3 (21E230) MacBook Pro (Retina, 13-inch, Early 2015) Memory: 16 GB 1867 MHz DDR3 RStudio 2021.09.0 Build 351 R version 4.1.2 (2021-11-01) — “Bird Hippie” Copyright (C)…

RNA-Seq is a high-throughput sequencing method used for unbiased detection and quantification of messenger RNA molecules, allowing the identification of genes and pathways underlying normal and pathological conditions. RNA-seq sequencing services are increasingly affordable which has led to the proliferation of published data available in public repositories accessible for everyone’s…

I find that when I try to load some packages in a conda environement, when using rstudio (but not when I’m using R directly), I get an error message about a missing Rcpp.so file. I activate my conda environment (which is running R version 4.1), open RStudio (which I installed…

I wanted to make a script that closes all Data Viewer tabs in RStudio (those invoked by clicking on a data object in the Environment pane, or by calling utils::View()) but keeps all the “usual” document tabs.First, I found rstudioapi::documentClose() function – not sure if it works for Data Viewer…

Hi! I am using the free account on R studio cloud. And I am getting this error: * installing *source* package ‘DESeq2’ … ** using staged installation ** libs g++ -std=gnu++14 -I”/opt/R/4.1.2/lib/R/include” -DNDEBUG -I’/cloud/lib/x86_64-pc-linux-gnu-library/4.1/Rcpp/include’ -I’/cloud/lib/x86_64-pc-linux-gnu-library/4.1/RcppArmadillo/include’ -I/usr/local/include -fpic -g -O2 -c DESeq2.cpp -o DESeq2.o g++: fatal error: Killed signal terminated program…

So I am a master’s graduate with zero background in programming (dropped computer science back in 8th grade) but I have done mathematics(calculus, differential equations, probability, statistics etc) in one form or another my entire life. Being stuck at home, I felt like learning a programming language and I was…

When I try to install the gtf for hg38 BiocManager::install(“TxDb.Hsapiens.UCSC.hg38.knownGene”) I get the following error: ‘getOption(“repos”)’ replaces Bioconductor standard repositories, see ‘?repositories’ for details replacement repositories: CRAN: cran.rstudio.com/ Bioconductor version 3.14 (BiocManager 1.30.16), R 4.1.2 (2021-11-01) Installing package(s) ‘TxDb.Hsapiens.UCSC.hg38.knownGene’ Error in readRDS(dest) : error reading from connection Per stackoverflow.com/questions/67455984/getoptionrepos-replaces-bioconductor-standard-repositories-see-reposito I…

Guys, I am trying to install this package on RStudio. I tried to install it on a windows virtual machine and it worked. I thought you guys could know what is happening and how to fix it. When I try to install the following happens: > install.packages(“minqa”) #This package is…

R’s log() function returns the logarithm of a value and is formatted as log(value, base). You can also use the logy() function to do a log in R. The natural logarithm of the value is the default output of this function. How Do I Create A Log In R? set…

1. Import HBAT200 data into RStudio 2. Build an appropriate regression model that will explain X22, “Current purchase/Usage Level” (Please note that X19-X23 are outcome variable, so do NOT use them as your independent variables) 3. Check model assumptions 4. Interpret the model and identify the factors that influence Current purchase/Usage Level…

Data Services Workshops are designed to provide faculty and students with training in data management, data visualization and analysis software platforms, and finding data resources. To register for these workshops, follow the links attached to each event. R and RStudio Special Topic: Scrapping TwitterThis workshop will introduce participants to using…

rstudio::conf, the conference for all things R and RStudio, will take place July 25-28 in National Harbor, DC! As usual, we’ll have two days of workshops followed by two days of talks. If you’ve attended before and already know you want to attend, register now! Otherwise, read on to learn…

After building a simple test package to isolate this issue, I receive the following warning when I run Rcmd.exe INSTALL –nomultiarch –with-keep.source simpleTest: * installing to library ‘C:/Users/user/Documents/R-dev’ * installing *source* package ‘simpleTest’ … ** R ** preparing package for lazy loading ** help *** installing help indices converting help…

Workflow Platforms for Systems Genetics eQTL Platforms eQTL Viewer Mouse Genome Informatics: Phenotypes, Alleles & Disease Models PhenoGen Informatics (CO U) eXtensible Genotype And Phenotype platform (XGAP) MOLGENIS & MetaNetwork, Swertz & Jansen, U Groningen Weighted Gene Co-expression Network Analysis (WGCNA), Horvath, UCLA iPlant Sage Bionetworks Repository: Synapse GenomeSpace Institute…

When the code for a particular project starts to get long, I often wish that there was an easy way to insert differently formatted headings for the major and minor sections, with larger print and perhaps bolding or a different typeface, just to help me navigate my own code. So…

Mastering RStudio – Develop, Communicate, and Collaborate with R will help you to solve real-world data problems. It begins by guiding you through the installation of RStudio and explaining the user interface step by step. From there, the next logical step is to use this knowledge to improve your data…

Job Description The SingHealth Duke-NUS Genomic Medicine Centre was established by SingHealth and Duke-NUS Medical School to advance the delivery of genomic medicine across the SingHealth Duke-NUS Academic Medical Centre (AMC). The Centre will bring together expertise from the various SingHealth institutions and Duke-NUS to leverage on advanced genomic technologies…

That depends on what kind of work you want to do. Until recently, I used Acer Swift 3 SF314-54 as my laptop and it was enough for most things, except for big Bayesian models (which I computed on a remote server). It should cost circa 600-700$. If you want to…

Hello there, I am currently struggling with changing the names of certain files and would appreciate some direction. I have pulled all the files I would like to change, into a vector like so. [1]”Fruit/Red/Berries/Strawberry.jpg” [2]”Fruit/Red/Apples.jpg” [3]”Fruit/Blue/Berries/Blueberry.jpg” etc. I have hundreds of these and would like to add a prefix…

I was able to solve this problem by deleting all R/RStudio resources which remained from installing them manually from .dmg: Uninstall CRAN R GUI app (drag it into the trash) Uninstall RStudio app (drag it into the trash) From Terminal: $ rm -rf ~/.rstudio-desktop/ $ rm -rf /Library/Frameworks/R.framework /Applications/R.app /usr/bin/R…

I think reproducibility is challenging to achieve for students/researchers who have limited access to bigger data storage, and a very important topic to talk about to get ready to jump into the real-world work setting.So I wanted to create a thread here to ask questions. Plus, I asked for help…

This would be a fairly simple Shiny app to build. Your best bet to start is with the Shiny documentation here, particularly the get started and gallery sections. You could try the book Mastering Shiny but that’s probably overkill for such a simple app. Note, to share this with your…

I’m trying to interpolate data from ERA5 Interim to a finer resolution (from 0.1° to 0.05°). I’m using the bilinear function from the akima package in Rstudio to do so, but whenever I try to compute it I only get zeros. What might be the reason behind this? As a…

Hello!I am new to the Rstudio!I can’t find a tutorial, or instructions for ordering our samples in the heatmapI have created the phyloseq object with the next scripts physeq<-qza_to_phyloseq(features=”file path/rarefied_table.qza”,metadata=”file path/Metadata.tsv”)taxonomy = read.csv(“file path/taxonomy.csv”,sep=”,”,row.names=1)taxonomy =as.matrix(taxonomy)TAX = tax_table(taxonomy)data_full<-merge_phyloseq(physeq,TAX) then I use ph = tax_glom(data_full, taxrank=’Genus’,NArm=FALSE)TOP = names(sort(taxa_sums(ph), TRUE)[1:20])TOPp = prune_taxa(TOP, ph)plot_heatmap(TOPp,…

I’m using RStudio on Ubuntu 18 and I’m trying to install the htslib package from the Bioconductor repo, but I’m stuck now. This is what I get: * installing *source* package ‘Rhtslib’ … ** using non-staged installation via StagedInstall field ** libs cd “htslib-1.7” && make -f “/usr/lib/R/etc/Makeconf” -f “Makefile.Rhtslib”…

Co-authored by: Nitesh Turaga – Scientist at Dana Farber/Harvard, Bioconductor Core Team Erdal Cosgun – Sr. Data Scientist at Microsoft Biomedical Platforms and Genomics team Vincent Carey – Professor at Harvard Medical School, Bioconductor Core Team   Introduction   The Bioconductor project promotes the statistical analysis and comprehension of current and emerging…

I had similar issues. I did following and it solved. Before that I would like to refer you in following threads from where I got the solution… Qt platform plugin issue Rstudio PyQt5 – Failed to load platform plugin “windows”. Available platforms are: windows, minimal Here is what you have…

I have recently experienced a serious problem with Rstudio when developing a package. Whenever, I open an existing project with Rstudio where versions are controlled with Git, it takes so long for it to respond to any command. It is also impossible to type something in the console (e.g. 1+1)…

I guess those plots shown in the gganimate article were created on a Linux platform. gganimate by default uses the ‘png’ device for rendering the single frames. png() on windows however by default uses the Windows GDI which is not available on Linux (cairographics is used). This is (probably) why…

I have a huge dataset in SAS (about 14 gb) that I am trying to import to R-studio for some analysis. However, nothing is working for importation. I tried ‘haven’, ‘sas7bdat’, ‘foreign’ but nothing. I converted the file to csv (became about 7gb) and tried read.csv, fread..but nothing again. R-studio…

Problem : ( Scroll to solution ) I would like to be able to run an indented block of code in python in the same way I do in R. In particular, if in RStudio I have the following indented block of code: print(seq(from = 1, to = 10, by…

Summary of problem: I install packages successfully but my libraries will not load. This problem has only happened recently. What steps have I taken?: I uninstalled and reinstalled Rstudio. I uninstalled and reinstalled the packages I want while setting dependencies = TRUE. Whenever I try to load the library of…

1. Sharma VK. Adaptive significance of circadian clocks. Chronobiol Int. 2003;20(6):901–19. PubMed  Google Scholar  2. Paranjpe DA, Sharma VK. Evolution of temporal order in living organisms. J Circadian Rhythms. 2005;3(1):7. PubMed  PubMed Central  Google Scholar  3. Yerushalmi S, Green RM. Evidence for the adaptive significance of circadian rhythms. Ecol Lett….

Problem : ( Scroll to solution ) In order to extract some fastq data from NCBI’s sequence read archive I’ve downloaded and installed the sra toolkit for Windows. In order to test if it is setup correctly, I opened cmd, navigated to the directory and typed in the command fasterq-dump…

I’m doing an R project on RStudio (RStudio 2021.09.1+372 “Ghost Orchid” Release for Windows), (R version 4.1.2). I’m working on Windows 10 x64. I want to create an Undirected Graph from a dataset: library(gRbase) library(gRim) library(gRain) data(BodyFat) BodyFat <- BodyFat[-c(31,42,48,76,86,96,159,169,175,182,206),] BodyFat$Age <- sqrt(BodyFat$Age) BodyFat$Weight <- sqrt(BodyFat$Weight) names(BodyFat)[names(BodyFat) == ‘BodyFat’] <-…

Hi, I’m trying to learn how to use RSQLite but I’m already having a problem, wondered if anyone knows how to fix it. I have a pre-existing database (.data) file which does not have attribute names and I am trying to create a SQLite database with a table defined with…

The RStudio Pro Database Drivers are installed on-demand by the RStudio IDE. Doing so requires internet connectivity. To test this, start RStudio and invoke the New Connection dialog from the Connections pane. The New Connection dialog shows the available database drivers. Select one, such as MySQL. RStudio first offers to…

Introduction Tuberculosis (TB) is considered to be one of the top ten causes of death in the world, about a quarter of the world’s population is infected with M. tuberculosis.1 The World Health Organization (WHO) divides tuberculosis into pulmonary tuberculosis (PTB) and extra-pulmonary tuberculosis (EPTB). Although breakthroughs have been made…

In 2011, Tim worked in software development while obtaining his computer science degree. He has worked in this field ever since. Over the years, he focused on server side development and cloud infrastructure. Tim loves the satisfaction of learning new things and building great software. After spending several years in…

RStudio Inc 250 Northern Ave., Boston, Massachusetts, 2210, United States Last updated 5 days ago RStudio is an integrated development environment (IDE) for R. It includes a console, syntax-highlighting editor that supports direct code execution, as well as tools for plotting, history, debugging and workspace management. RStudio,…

0 1 0 summary-statistics,Fictional company AutosRUs’ newest prototype, the MechaCar, is suffering from production troubles that are blocking the manufacturing team’s progress. AutosRUs’ senior management enlisted assistance from the data analytics team to review the production data for insights that may help the manufacturing team overcome their production issues. User:…

Want to improve this question? Update the question so it’s on-topic for Cross Validated. Closed 4 hours ago. I would like to change a chr column in my dataframe to a datetime column. Date Value 1 01/7/20 13:05 100 2 01/7/20 13:15 102 3…

In this tutorial, we will show you how to install RStudio IDE on Fedora 35. For those of you who didn’t know, RStudio provides free and open-source tools for R and enterprise-ready professional software for data science teams to develop and share their work at scale. RStudio makes it easier…

Hi, I’m trying to run R on a virtual machine through work, but it is running very slowly. I was running code on a physical machine, but I needed more RAM than was available. I was able to have a new virtual machine created for me with more RAM, which…

System details RStudio Edition : Dektop RStudio Version : 1.4.1717 and 2021.09.0+350 OS Version : Debian 11 R Version : 4.0.4 Steps to reproduce the problem Knit an R Markdown file to Word format. The file should be created. However, it’s not automatically opened. Click on the file in the…

Introduction Most cases of pancreatic adenocarcinoma (PDAC) are diagnosed in the metastatic or locally advanced stage. It is the fourth leading cause of cancer death in the United States,1,2 with a 5-year overall survival (OS) around 10% in this country2 despite years of research and therapeutic development. For those patients…

Hi I’m new to bioinformatics and have just completed my first run on the MinION (long read sequencing Oxford Nanopore Technologies). I was hoping someone could direct me towards R packages, workflow, tutorials or guides that will help me identify species that are present in my sample mainly for fungi…

Instead of going through Rstudio, you can use the functions in the knitr package directly. There are some options you can tweak, but to get started, all you have to do is call the knit() function on your .Rnw file: library(knitr) knit(‘my_input.Rnw’) If you’re missing some of Rstudio’s features, it’s…

blog Shiny Apps from Concept to Production – An RStudio Community X-Session with Appsilon Curtis Kephart | July 27, 2021 | Ready to take your Shiny development skills to the next level? This RStudio Community X-Session connects you with the Shiny experts at Appsilon. The two-hour workshop covers development workflows,…

Job Detail Job Description Excelraise, LLC is a rapidly growing full service IT solutions integrator and talent management company headquartered in Denver, CO. Our valued client*s includes fortune 500 companies, Government Agencies. Currently we are looking for a qualified individual to work as a DataBase Programmer / DataBase Analyst (ETL…

The last version of RStudio to support a 32-bit OS was 1.1.463. You can download it from here (scroll down until you find it). You should be able to install the latest release of R from here, just make sure that you install the 32-bit version. From experience, R/Rstudio 1.1.463…

Certain, it’s good when I’ve an image of some object, and a neural community can inform me what sort of object that’s. Extra realistically, there is perhaps a number of salient objects in that image, and it tells me what they’re, and the place they’re. The latter process (referred to…

Everyone loves a clean working environment and it helps to increase productivity. This works the most especially for programmers and those that make regular use of the R or Rstudio consoles on their computers. However, a lot of lines and commands in the console can sometimes hinder productivity which is…

Why the brand new title, RStudio AI Weblog? There’s a easy motive. The earlier title, “TensorFlow for R Weblog”, was an excellent match for the content material we lined to date: technical or utilized features of performing deep studying with TensorFlow and Keras. But, our crew (the Multiverse Group) is…

  In this R tutorial you’ll learn how to draw the cumulative sum of a vector in a histogram. Table of contents: Here’s how to do it!   Example Data The following data is used as basement for this R programming language tutorial: set.seed(258967) # Create example data data <-…

This may be a very basic question for guys who handle daily with programming issues! And until today I was not able to find the right words to ask and now I hope I can explain clearly what I want! It is technically not a coding question! It is not…

Note: This workshop has changed to online only. To register for the online session, please see this link instead: libcal.uvic.ca/calendar/go/intermediaterstudio1 After the Introduction to Data Analysis with RStudio workshop, the Intermediate RStudio workshop is the perfect next step! Previous experience with RStudio and knowledge of introductory statistics necessary. We recommend…

R Markdown: some chunks disappeared – no errors, works when I run the chunks · Issue #10233 · rstudio/rstudio · GitHub You can’t perform that action at this time. You signed in with another tab or window. Reload to refresh your session. You signed out in another tab or window….

I am running the following (open source) release of RStudio RStudio 2021.09.1+372 “Ghost Orchid” Release (8b9ced188245155642d024aa3630363df611088a, 2021-11-08) for WindowsMozilla/5.0 (Windows NT 10.0; Win64; x64) AppleWebKit/537.36 (KHTML, like Gecko) QtWebEngine/5.12.8 Chrome/69.0.3497.128 Safari/537.36 on Edition Windows 10 Home Version 21H1 Installed on ‎8/‎11/‎2020 OS build 19043.1348 Experience Windows Feature Experience Pack 120.2212.3920.0…

The Interactive Desktop app provides a grapical user interface that runs as a batch job on pronto. Any module that can be loaded in a normal Pronto batch job can be loaded within the interactive desktop. In addition, the following modules have easy-to-use launcher shortcuts. Matlab Mathematica RStudio Getting Started…

Although the Connection Pane is actually really great to explore a new database, it is rather unhandy in some situations. For example, when the database you connect to is big and it takes 5-10 seconds to show the schemes etc. and the same time you connect and disconnect multiple times…

I’m trying to create a standard monthly report for work in PDF format using Rstudio and I want to incorporate ggplot output with a table of figures – a new chart, one per cell on each row. I’m new to markdown, latex, pandoc and knitr so this is a bit…

RStudio supports your Data Science Cloud Strategy Regardless of which approach you choose, RStudio provides multiple options to support your cloud journey: Simplify and reduce startup costs with a SaaS solution: Promote collaboration and instruction between organizations and groups Mitigate high costs of computing infrastructure Scale to meet variable demand….

R studio has been working fine for me since August. Today it comes up and everything displays but if I click on anything nothing works. I have to use end task to close it and none of the menus work either. I have uninstalled and re-installed R-studio and R several…

Job Description Apply to this job here: turing.com/Nrdee7 Only candidates with 12+ years of software development experience are eligible for this role. Turing.com is looking for a Principal Data Scientist on behalf of a well-established next-generation consumer products company with a global footprint. The selected candidate will be the center…

for (roads_r in rasters){ # roads_r is a rasterized lines object, value 1 where roads, rest is NA # built a random name (I’m aware I could use tempdir(), but explored this to have files at hand tmp_custom <- paste0(“tmp”, paste0(sample(1:9, 1), sample(1:9, 1), sample(1:9, 1), sample(1:9, 1))) tempDir <-…

In June 2021 ActiveState, a provider of curated Tcl/Tk, Perl and Python distributions, changed their licensing for their community editions to require payment. I would like to ensure I am complying with these changes. I am reaching out to see if the Tcl libraries used by R/RStudio are those provided…

Inscripta was founded in 2015 and recently launched the world’s first benchtop Digital Genome Engineering platform. The company is growing aggressively, investing in its leadership, team, and technology with a recent $150mm financing round led by Fidelity and TRowe price. The company’s advanced CRISPR-based platform, consisting of an instrument, reagents,…

Generating multiple heatmaps with heatmap3 and lapply 1 Hey everybody I have a series of .csv files from RNA-seq data stored in a list and I am trying to produce a heatmap for each of them by using heatmap3 function combined with lapply in R, after first converting each of…

How can the R location be customized for RStudio I previously used homebrew to install R and the package installer for RStudio. Recently I started using Boxen, which takes over homebrew. I had to re-install R from source using homebrew, and it now exists in my Boxen Cellar location. Now…

paid / full-time / USA-Remote RStudio creates great software that helps people understand data and make better decisions in real-world applications. Our core offering is an open source data science toolchain, and we aim to make it available to everyone, regardless of their economic means. Our mission is to provide…

Using RStudio on Amazon SageMakerPresented by James Blair *please note that this meetup will share a new update about our professional product, RStudio Workbench. All are welcome, but just wanted to make sure to share that upfront 🙂 Agenda:Presentation & Demo – 40 minutesQ&A with both RStudio & AWS SageMaker…

I’m trying to import packages by using library(). The packages I want to use are ‘sf’, ‘rnaturalearth’, ‘rnaturalearthdata’. I have successfully installed those packages. But when I run the library(), the rstudio is just keep loading, the chunk is always in running mode (with a red stop symbol). I can…

Using special characters in Rstudio I am working with some special characters in Rstudio. It coverts them into plain letters. print(“Safarzyńska2013”) [1] “Safarzynska2013” x <- “Māori” x [1] “Maori” Is there any way to read in the exact original characters. Following info might be helpful: Rstudio default encoding is UTF-8…

RBERT is an R implementation of the Python package BERT developed at Google for Natural Language Processing. Installation You can install RBERT from GitHub with: # install.packages(“devtools”) devtools::install_github( “jonathanbratt/RBERT”, build_vignettes = TRUE ) TensorFlow Installation RBERT requires TensorFlow. Currently the version must be <= 1.13.1. You can install it using…

I’m going to use the comment posted by @cboettig in order to resolve this question. Packrat Packrat is a dependency management system for R. Gives you three important advantages (all of them focused in your portability needs) Isolated : Installing a new or updated package for one project won’t break…

Install package without updating dependent package 1 @23c4e923 Last seen 18 hours ago Japan Hi, I’m trying to install AnnotationForge, and it is said that the package “Matrix” is old. > BiocManager::install(“AnnotationForge”) ‘getOption(“repos”)’ replaces Bioconductor standard repositories, see ‘?repositories’ for details replacement repositories: CRAN: cran.rstudio.com/ Bioconductor version 3.14 (BiocManager 1.30.16),…

ImageNet (Deng et al. 2009) is a picture database organized in keeping with the WordNet (Miller 1995) hierarchy which, traditionally, has been utilized in pc imaginative and prescient benchmarks and analysis. Nonetheless, it was not till AlexNet (Krizhevsky, Sutskever, and Hinton 2012) demonstrated the effectivity of deep studying utilizing convolutional…

The book “Advanced R, 2nd Edition” by Hadley Wickham (CRC Press) came out in 2019 with much fanfare. Wickham is an internationally recognized R guru, Chief Scientist at RStudio and a member of the R Foundation. He’s also responsible for bringing the Tidyverse suite of R packages to the global…

I’m finding errors using the function fasterRastDistance() in the fasterRaster R library when running the same script in several simultaneous RStudio instances. The error looks like this: ERROR: You must select the PERMANENT mapset before updating the current location’s projection (current mapset is <<UNKNOWN>>) access: Invalid argument ERROR: LOCATION <C:/Users/JavierF/AppData/Local/Temp/RtmpqoyKjm<UNKNOWN>>…