Categories
Tag: RTMP
rstudio – html dependency error when rendering slide presentation in quarto
I am working in the latest version of R and RStudio. I kept having an html dependency path error when trying to render revealjs slides in quarto. The problem is with a missing Rtmp folder that I have on one computer but not my laptop where I am also doing…
Running samtools view on bam affects the number of variants called by both haplotypecaller and deepvariant – C samtools
Thanks for getting back to me Valeriu. As you suggested, I used the latest commit from the develop branch in my pipeline, and the results look good. I was able to replicate the numbers from samtools v1.10.2 and v1.11 for both variant callers. FYI $ docker run scilifelabram/htslib:dev_proper /opt/samtools/samtools version…