Tag: SeqIO.pm

Can’t locate Bio/SeqIO.pm – githubhot

Hi i am using MacOS Catalina, i am facing this error. i have tried through conda and CPAN to fix this. i am facing this error from last 2 weeks, Before this module was working . Can you guide me, How i can fix it. Can’t locate Bio/SeqIO.pm in @INC…

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cgview: Can’t locate Bio/SeqIO.pm in @INC

Tried two new images quay.io/biocontainers/cgview:1.0–5 quay.io/biocontainers/cgview:1.0–4 Same issue: Digest: sha256:c824eff236de755b06805a02df35f58c67d3aa4c73c09fb7dce3742336ab57f3 Status: Downloaded newer image for quay.io/biocontainers/cgview:1.0–4 Can’t locate Bio/SeqIO.pm in @INC (you may need to install the Bio::SeqIO module) (@INC contains: /usr/local/lib/site_perl/5.26.2/x86_64-linux-thread-multi /usr/local/lib/site_perl/5.26.2 /usr/local/lib/5.26.2/x86_64-linux-thread-multi /usr/local/lib/5.26.2 .) at /usr/local/bin/cgview_xml_builder.pl line 17. BEGIN failed–compilation aborted at /usr/local/bin/cgview_xml_builder.pl line 17. Read more here:…

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Can’t locate Bio/SeqIO.pm – path error?

Can’t locate Bio/SeqIO.pm – path error? 0 Hi, I am trying to run snippy on my UBUNTU18 (inside a conda env that has this tool installed) but am getting an error: Can’t locate Bio/SeqIO.pm in @INC (you may need to install the Bio::SeqIO.pm module) I checked the posts here, and…

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Bioperl SeqIO.pm cannot be found

Hello, I am trying to run this command line in the terminal from Mac OS, which is copied from a protocol: FEELnc_codpot.pl –i <unannotated_transcript.fa> -a <mRNA_sequence.fa> -g <reference_genome.fa> -m ’shuffle’ –o <unannotated_transcript> However, I get the following error: command not found, probably because I am not using perl, so I…

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