Tag: shell

AI Software Solutions Engineer at Intel

Job Description Intel Datacenter and AI Group focuses on developing disruptive solutions that will shape the future of AI and Deep Learning computing. Led by top technologists and successful entrepreneurs, our vision is to take AI processing from its current limits to the peak of its potential. We see challenges…

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crash on startup due to a python error

Package: sagemathVersion: 9.5-6Severity: important Dear Maintainer, I cannot start sage on my computer. Simply running ‘sage’ in console leads tothe following errors: ┌────────────────────────────────────────────────────────────────────┐│ SageMath version 9.5, Release Date: 2022-01-30 ││ Using Python 3.11.5. Type “help()” for help. │└────────────────────────────────────────────────────────────────────┘Error in sys.excepthook:Traceback (most recent call last):File “/usr/lib/python3.11/pathlib.py”, line 1251, in is_dirreturn S_ISDIR(self.stat().st_mode)^^^^^^^^^AttributeError:…

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Google Expands Duet AI in Google Cloud for App Development, DevOps, and More

At Google Cloud Next, Google has expanded its always-on collaborator Duet AI with new features aimed at helping developers with application development, DevOps, database management and migration, data analysis and visualization, as well as cybersecurity. Duet AI in Google Cloud provides expert assistance across your entire software development lifecycle….

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Research Assistant Job in Bioinformatics and Metapangenomics at The Swedish University of Agricultural Sciences in Sweden

The Department of Aquatic Sciences and Assessment is working with applied environmental science, with a national responsibility for assessing the condition of Swedish surface waters with respect to water chemistry, pollution and aquatic biota. The department has about 140 employees. The research focuses on geochemical and hydrological processes, aquatic…

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python – Run command when creating Conda environment with Snakemake

I presume that downloading script produces some output. I would split your rule into two rules, one specifically for downloading and the other only for running the annotation. The downloading rule will have declared only the output directive, which would be the input for the second rule. rule download_genome: output:…

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How Google Cloud Is Leveraging Generative AI To Outsmart Competition

At Google Cloud Next, the search giant’s annual cloud computing conference, generative AI took center stage. From Sundar Pichai’s and Thomas Kurian’s keynotes to various breakout and partner-led sessions, the conference was squarely focused on generative AI. Thomas Kurian, CEO, Google Cloud Google With the investments made in generative AI,…

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How Google Cloud is leveraging Generative AI to beat the competition

At Google Cloud Next, the search giant’s annual cloud computing conference, generative AI took center stage. From keynote speeches by Sundar Pichai and Thomas Kurian to various breakout and partner-led sessions, the conference was completely focused on Generative AI. Thomas Kurian, CEO, Google Cloud Google With the investments it has…

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Flower Simulation example using PyTorch

This introductory example uses the simulation capabilities of Flower to simulate a large number of clients on either a single machine or a cluster of machines. Take a look at the Documentation for a deep dive on how Flower simulation works. Running the example# Start by cloning the code example….

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google cloud platform – using vertex ai in custom python script outside AI workbench and collab fails with permission denied

I’m trying to use GCP Vertex AI outside of a GCP managed AI Workbench notebook environment or Google Collab notebook environment. Specifically I am trying to run in an self hosted jupyter notebook environment. Here is my setup and problem: Setup GCP and shell running python We used info from…

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Master Students in Molecular Mycology and Bioinformatics

Master Students in Molecular Mycology and Bioinformatics – Natural Resources Job Board Agency Tennessee Tech University Location Tennessee Tech University Job Category Research (Researcher) Salary TBD Last Date to Apply 10/30/2023 Description I am looking for two enthusiastic and self-motivated graduate students (Master degree) familiar with molecular biology and bioinformatics…

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Research Assistant – Bioinformatics and Metapangenomics – SLU

Research Assistant – Bioinformatics and Metapangenomics SLU – Swedish University of Agricultural Sciences Uppsala, Sweden Department of Aquatic Sciences and Assessment The Department of Aquatic Sciences and Assessment is working with applied environmental science, with a national responsibility for assessing the condition of Swedish surface waters with respect to water…

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Experimental and Theoretical Brownian Dynamics Analysis of Ion Transport During Cellular Electroporation of E. coli Bacteria

Abrahamson, A. A. Born–Mayer-type interatomic potential for neutral ground-state atoms with Z = 2 to Z = 105. Phys. Rev. 178:76–79, 1969. Article  CAS  Google Scholar  Alegun, O., A. Pandeya, J. Cui, I. Ojo, and Y. Wei. Donnan potential across the outer membrane of Gram-negative bacteria and its effect on…

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Gene Therapy Reduces Hearing Loss Caused by Norrie Disease in Mice

Norrie disease is a rare, recessive, X-linked, genetic disorder. The devastating disease, caused by a mutation in the NDP gene, manifests as blindness at birth followed by progressive hearing loss starting from roughly 12 years of age. The result is debilitating, dual sensory, deprivation. Now, an international team of researchers…

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Dna Sequence iPhone Case by Scott Camazine – Science Source Prints

Warning The image is near the edges of the product but doesn’t cover the entire product.   Some of the background color may appear around the outside edges of the image. Product Details Dna Sequence iPhone case by Scott Camazine.   Protect your iPhone with an impact-resistant, slim-profile, hard-shell case. The image is printed…

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Bioinformatics Analyst III job with Frederick National Laboratory for Cancer Research

Bioinformatics Analyst III Job ID: req3697Employee Type: exempt full-timeDivision: Cancer Research Technology ProgramFacility: Rockville: Gaither RdLocation: 2099 Gaither Rd, Rockville, MD 20850 USA The Frederick National Laboratory is a Federally Funded Research and Development Center (FFRDC) sponsored by the National Cancer Institute (NCI) and operated by Leidos Biomedical Research, Inc….

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Scientist – Bioinformatics job with Regeneron Pharmaceuticals, Inc.

We are looking for an enthusiastic Bioinformatics Scientist to work in close collaboration with scientists from diverse fields and who can lead independent scientific projects. You will develop and maintain innovative bioinformatics methods and computational pipelines running on high-performance computing platforms that help the Regeneron Genetics Medicines group create next…

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R for Bio Data Science

Package(s) Schedule 08.00 – 08.15: Arrival and 5 min. pre-course anonymous survey: Click here to answer 08.15 – 08.45: Lecture: Course Introduction 08.45 – 09.00: Break 09.00 – 11.15: Exercises 11.15 – 11.30: Break 11.30 – 12.00: Lecture: Reproducibility in Modern Bio Data Science Learning Materials Please prepare the following…

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University of Minnesota hiring Bioinformatics Analyst in Greater Minneapolis-St. Paul Area

About the Job The Research Informatics (RI) Bioinformatics group within the University of Minnesota Supercomputing Institute (MSI) is hiring a full-time Bioinformatics Analyst to support research for the Department of Microbiology and Immunology (MI) at the University of Minnesota. The analyst in this position will conduct cutting-edge bioinformatics analyses in…

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Bioinformatics Analyst III Job in Maryland (MD), $vacancy_industry Career, Full Time Jobs in Frederick National Laboratory for Cancer Research

Bioinformatics Analyst III Job ID: req3697Employee Type: exempt full-timeDivision: Cancer Research Technology ProgramFacility: Rockville: Gaither RdLocation: 2099 Gaither Rd, Rockville, MD 20850 USA The Frederick National Laboratory is a Federally Funded Research and Development Center (FFRDC) sponsored by the National Cancer Institute (NCI) and operated by Leidos Biomedical Research,…

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Urgent Needed – Machine Learning Engineer – Charlotte, NC – SATCON Inc

Hi,   Our Client is looking for Machine Learning Engineer for Charlotte, NC. If you are looking for a change, please let me know.                          Machine Learning Engineer Charlotte, NC 12+ Months of Contract Job   Job Description Looking for an experienced Cloud Machine Learning Engineer with a strong background in designing, building, automating, deploying, and…

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Global Mice Model Market Size and Forecast

New Jersey, United States – The report on the Global Mice Model Market provides a comprehensive and accurate overview of the industry, considering various factors like competition, regional growth, segmentation, and market size in terms of value and volume. It serves as an exceptional research study, offering the latest insights into…

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Global Direct-To-Consumer (DTC) Genetic Testing Market Size and Forecast

New Jersey, United States – Verified Market Research recently released a research report titled “Global Direct-To-Consumer (DTC) Genetic Testing Market Insight, Forecast.” The report extensively discusses the Global Direct-To-Consumer (DTC) Genetic Testing market, offering readers a comprehensive understanding of key trends, top strategies, and potential growth opportunities. It incorporates Porter’s Five…

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Do silicone breast implants raise risk of breast cancer? What experts say | Health

Can breast implants raise risk of breast cancer? The US Food and Drug Administration found out that there is an association between breast implants and the development of breast implant-associated anaplastic large cell lymphoma (ALCL), which is a rare cancer of the immune system. The common symptoms are persistent swelling…

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EMDB < EMD-40539

Field: Choose…EMDB IDTitleAuthorORCIDEM methodCurrent statusDeposition dateRelease dateDeposition siteLast processing siteFitted modelsRaw dataResolutionResolution methodSoftwareLigand nameComplex nameDomain nameDrug nameGO term nameInterPro term nameChEBI term nameExternal reference Publication titlePublication yearJournalPublication author Sample typeSample nameOrganismOrganism (NCBI code)StrainOrganTissueCellOrganelleCellular LocationE.C. numberMolecular Weight methodMolecular Weight (Da)Recombinant ExpressionRecombinant organismRecombinant organism (NCBI code)Recombinant strainRecombinant expression cellRecombinant expression plasmidDNA/RNA classificationDNA/RNA…

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Bioinformatics Systems Administrator, Emory Integrated Computational Core

Discover Your Career at Emory University Emory University is a leading research university that fosters excellence and attracts world-class talent to innovate today and prepare leaders for the future. We welcome candidates who can contribute to the diversity and excellence of our academic community. Description JOB DESCRIPTION: + Installs, maintains,…

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RSTUDIO Administrator, Atlantic Highlands, New Jersey

We are Cognizant Artificial Intelligence Digital technologies, including analytics and AI, give companies a once-in-a-generation opportunity to perform orders of magnitude better than ever before. But clients need new business models built from analyzing customers and business operations at every angle to really understand them. With the power to apply…

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Google Cloud Vertex AI Machine Learning Consultant (Day 1 Onsite) – Sydata, Inc

Google Cloud Vertex AI Machine Learning Consultant – Day 1 Onsite Charlotte, NC 28202 ( Need Local Candiate, Day 1 Onsite) 06 Months Minimum years of experience*: 10 years Must Have Skills: Google Cloud Vertex AI Machine learning Nice to have skills Python Cloud Detailed Job Description: This role Cloud…

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How to globally specify that shell sessions for all tasks must source (e.g.) $HOME/.profile ?

As far as I can tell, by default at least, shell sessions corresponding to the command section of tasks in a WDL do not source any of the user-specific shell initialization files, such as $HOME/.profile, $HOME/.bash_profile, or $HOME/.bashrc. This makes it difficult to implement uniform set-up behaviors that should happen…

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Integrating AlphaFold and deep learning for atomistic interpretation of cryo-EM maps

Abstract Interpretation of cryo-electron microscopy (cryo-EM) maps requires building and fitting 3-D atomic models of biological molecules. AlphaFold-predicted models generate initial 3-D coordinates; however, model inaccuracy and conformational heterogeneity often necessitate labor-intensive manual model building and fitting into cryo-EM maps. In this work, we designed a protein model-building workflow, which…

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Qiime2 Python API unifrac dist matrix error: FileNotFoundError: [Errno 2] No such file or directory: ‘ssu’ – Technical Support

Hi all, I am trying to generate an unweighted unifrac with the qiime2 python API and get the following output and error: from qiime2 import Artifact from qiime2.plugins import diversity_lib tab1N=(‘/home/sdegregori/TOL/GMTOLsubsample/GMTOLsong_tablef_V4_N1_pythontest.qza’) phyf=(‘/home/sdegregori/TOL/GMTOLsubsample/GMTOLsong_rooted_treef.qza’) table1N = Artifact.load(tab1N) phylogenyf = Artifact.load(phyf) distance_matrix_result = diversity_lib.methods.unweighted_unifrac(table=table1N,phylogeny=phylogenyf) distance_matrix = distance_matrix_result.distance_matrix distance_matrix.save(‘/home/sdegregori/TOL/GMTOLsubsample/adonis/UW1N.qza’) Running external command line application….

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Flower Example using PyTorch – Flower Examples 1.5.0

This introductory example to Flower uses PyTorch, but deep knowledge of PyTorch is not necessarily required to run the example. However, it will help you understand how to adapt Flower to your use case. Running this example in itself is quite easy. Project Setup# Start by cloning the example project….

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tests time out after 5 minutes

Source: mutter Severity: normal Version: 44.0-2 Tags: help X-Debbugs-CC: debia…@lists.debian.org User: debia…@lists.debian.org Usertags: s390x Recent versions of the mutter compositor/window manager library fail their “as-installed” tests on s390x. Steps to reproduce: * have a Debian testing/unstable environment * `apt install gnome-desktop-testing mutter-${v}-tests` (where ${v} is 11, 12 or 13 for mutter 43.x, 44.x…

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How to loop over certain files within a directory that belongs to certain samples

How to loop over certain files within a directory that belongs to certain samples 2 EDIT by RamRS Cross-posted on bioinfo SE: bioinformatics.stackexchange.com/questions/21464/how-to-loop-over-certain-files-within-a-directory-that-belongs-to-certain-sample I have two samples where the sequencing was done on 3-lanes paired end reads. The two samples are A44943_1 and A44944_1. I would like to generate a…

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[Seminar] “Single-cell RNAseq approaches of shell-bearing foraminifers provide new insights into understanding marine ecology and evolution” by Prof. Yurika Ujiie

Speaker: Dr. Yurika Ujiie, Marine Core Research Institute, Kochi University [website] Seminar Title: Single-cell RNAseq approaches of shell-bearing foraminifers provide new insights into understanding marine ecology and evolution Abstract: Marine protists and their diversity underpin life and ecosystems in the ocean. Foraminifera are crucial players in global biogeochemical cycles due to a…

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main-armv7-default][misc/pytorch] Failed for pytorch-1.13.1_1 in configure

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/ampere2/data/main-armv7-default/pd101ab5189f9_sb231322dbe/logs/pytorch-1.13.1_1.log Build URL: pkg-status.freebsd.org/ampere2/build.html?mastername=main-armv7-default&build=pd101ab5189f9_sb231322dbe Log: =>> Building misc/pytorch build started at Mon Aug 21…

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Oak Ridge Institute for Science and Education hiring FDA Bioinformatics Software Engineering Fellowship in Silver Spring, MD

OrganizationU.S. Food and Drug Administration (FDA)Reference CodeFDA-CBER-2023-15How To Apply Connect with ORISE…on the GO! Download the new ORISE GO mobile app in the Apple App Store or Google Play Store to help you stay engaged, connected, and informed during your ORISE experience and beyond!A complete application consists of: An application…

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Germ-Free Wasp Embryo Collection and Rearing with Nasonia-Rearing Medium (NRM)

Transcript To begin, parasitize about 40 Lucilia sericata pupae onto emerging adult male and female Nasonia wasps mated for 1.5 days. Within 12 to 24 hours after parasitization, carefully open one end of the pupal shell using a sterile dissecting needle. Hold the other end of the shell and locate…

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Thermo Fisher Scientific hiring Staff Scientist, Bioinformatics in South San Francisco, California, United States

DUTIES:Develop new products in the area of Infectious Diseases.Work closely with scientists from other R&D teams and analyze data from new assay products, based primarily on real time PCR and sequencing.Work with a variety of genomes, including bacteria, fungal, virus and protozoan and be able to analyze these in depth.Support…

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Ulcerative Colitis Treatment by CLP loaded with NLRP3 siRNA

Introduction Since the 20th century, tThe incidence of ulcerative colitis (UC) has been increasing over time, negatively affecting peoples’ health.1,2 UC is a multifactorial induced inflammatory bowel disease (IBD) characterized by chronic recurrent and remitting mucosal inflammation.3,4 It originates in the rectum and then extends to the proximal segments of…

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Updated List of Unix tutorials 2023

Tutorial:Updated List of Unix tutorials 2023 0 Hello everyone, We’ve noticed an increasing number of inquiries about reliable Unix tutorials to kickstart one’s journey into bioinformatics. To address this need, we’ve compiled a selection of recommendations below. Feel free to expand upon this list with additional resources you find valuable….

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Senior Software Engineer/SRE – Artificial Intelligence Group

The Team: The AI Group is the central engineering group responsible for driving Machine Learning adoption at Bloomberg, with over 200 researchers and engineers working together to provide clients with the best-in-class news, research, market data, and analytics using innovative machine learning technology. We directly impact a wide variety of…

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a cross-platform, efficient, practical and pretty CSV/TSV toolkit

Tool:csvtk – a cross-platform, efficient, practical and pretty CSV/TSV toolkit 2 Hi all, I’d like to share my another practical toolkit, csvtk, after introducing SeqKit yesterday. Introduction Similar to FASTA/Q format in field of Bioinformatics, CSV/TSV formats are basic and ubiquitous file formats in both Bioinformatics and data sicence. People…

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Error in snakemake with working shell script

Error in snakemake with working shell script 0 I want to run fastqc using snakemake. This is my snakemake script. configfile: ‘sample_config.yaml’ configfile: srcdir(‘path_config.yaml’) FASTQC = config[‘FASTQC’] UNZIP = config[‘UNZIP’] rule all: input: fqc1 = expand(“00_QC/{sample}_fastqc.txt”, sample = config[‘sample’]), rule fastqc: input: fq1 = lambda wildcards: config[‘sample’][wildcards.sample][‘fq1’], output: fqc1 =…

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Job: Research Assistant – Bioinformatics at Vastu Vihar Biotech Pvt Ltd India

Job Description Roles and Responsibilities Roles and Responsibilities: * Analyzing and interpreting biological data using computational tools and algorithms.* Developing and implementing bioinformatics pipelines and workflows for data processing, analysis, and visualization.* Conducting statistical analysis and data mining to extract meaningful insights from large biological datasets.* Collaborating with biologists, geneticists,…

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Data Engineer – Hinxton, United Kingdom – EMBL

Engineering / Architecture Description Your role This opportunity will enable you to apply your skills acquired in supporting production systems in an academic or commercial setting to improve the resources that play a crucial role into research with human genetic diseases and ageing. As data engineer, you will manage the…

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Systems Administrator – United Kingdom – Euroscicon Ltd

Description You are here: Home / Jobs / Systems Administrator Job Description We are seeking an experienced Systems Administrator to join the Systems Infrastructure Team at the European Bioinformatics Institute (EMBL-EBI) located at the Wellcome Trust Genome Campus near Cambridge in the UK.This position is in the Compute team which…

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Python Pytorch: How can I use Python Poetry to install PyTorch?

Python Poetry is a tool used to manage dependencies and create virtual environments for Python projects. It can be used to install PyTorch, a popular open-source deep learning library for Python. To install PyTorch with Python Poetry, first create a new project directory and cd into it: $ mkdir my_pytorch_project…

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Moderna hiring Associate Bioinformatics Engineer in Cambridge, Massachusetts, United States

The RoleIn this role, you will develop computational protein engineering and bioinformatics pipelines and implement novel algorithms internally to support the Research and Early Development efforts for cancer vaccine related programs. You will work closely with computational scientists, bioinformaticians, statisticians, engineers and laboratory scientists within Oncology and cancer therapeutics teams…

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Rstudio can’t find CMAKE even though it is in /usr/local/bin – Package Management

I have been attempting to install a package that requires cmake. However, Rstudio can’t seem to find it for some reason: R version 4.3.1 (2023-06-16) — “Beagle Scouts” Copyright (C) 2023 The R Foundation for Statistical Computing Platform: x86_64-apple-darwin22.4.0 (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY….

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Reassessing Stephanofilaria stilesi dermatitis in cattle, with characterization of molecular markers for confirming diagnosis | Parasites & Vectors

Although a common dermatitis of cattle in North America, much remains undescribed about the histological features of S. stilesi, and very little is known about aspects of its evolutionary biology and taxonomic classification. This can be partly attributed to the dated literature on stephanofilariasis in North American cattle [17]. However,…

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Data Engineer – Saffron Walden, United Kingdom – EMBL-EBI

Description We are looking for a data engineer to join the International Mouse Phenotyping Consortium, as part of the EMBL-EBI Sample, Phenotypes and Ontologies team. This role would be ideal for someone with a strong background in using R and Python. The International Mouse Phenotyping Consortium (IMPC) is a G7…

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Job Application for Data Scientist, Bioinformatics at Tome Biosciences

Tome Biosciences is the programmable gene insertion company. Using CRISPR, our technologies allow us to insert any genetic sequence of any size at any location into any genome. We are writing the final chapter in genomic medicines, delivering cures to patients through cell and genome engineering. Data Scientist, Bioinformatics  …

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Singapore Food Agency recalls eggs from Ukraine

The Singapore Food Agency (SFA) is recalled eggs imported from Yasensvit farm in Ukraine, because the presence of Salmonella Enteritidis was detected in some of the eggs. According to the SFA, the eggs affected by the recall can be identified by a stamp on the shell that reads “CEUA001.” A…

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R-Studio 9.3.191227

R-Studio is a family of powerful and cost-effective data recovery and undelete utilities. Empowered by the new unique data recovery technologies, it is the most comprehensive solution for data recovery from FAT12/16/32, NTFS, NTFS5 (created or updated by Windows 2000), and Ext2FS (LINUX file system) partitions. It functions on local…

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EMDB < EMD-12919

Field: Choose…EMDB IDTitleAuthorORCIDEM methodCurrent statusDeposition dateRelease dateDeposition siteLast processing siteFitted modelsRaw dataResolutionResolution methodSoftwareLigand nameComplex nameDomain nameDrug nameGO term nameInterPro term nameChEBI term nameExternal reference Publication titlePublication yearJournalPublication author Sample typeSample nameOrganismOrganism (NCBI code)StrainOrganTissueCellOrganelleCellular LocationE.C. numberMolecular Weight methodMolecular Weight (Da)Recombinant ExpressionRecombinant organismRecombinant organism (NCBI code)Recombinant strainRecombinant expression cellRecombinant expression plasmidDNA/RNA classificationDNA/RNA…

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Bioinformatics Analyst / Data Scientist job with University of Colorado Anschutz Medical Campus

Bioinformatics Analyst / Data Scientist – 30767 University Staff Description University of Colorado Anschutz Medical Campus Department: Linda Crnic Institute for Down Syndrome Official Title: Research Services Information Science Professional (Open Rank: Senior &ndash; Principal) Job Title: Bioinformatics Analyst / Data Scientist Position: #00812457 &ndash; Requisition: #30767 Job Summary: The…

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Scientist – Bioinformatics – Tarrytown

We are looking for an enthusiastic Bioinformatics Scientist to work in close collaboration with scientists from diverse fields and who can lead independent scientific projects. You will develop and maintain innovative bioinformatics methods and computational pipelines running on high-performance computing platforms that help the Regeneron Genetics Medicines group create next…

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Bioinformatics HOL268 – Bhagalpur | Jobrapido.com

Back to search: [[backlinkLabel]] Bhagalpur – Bihar Digianalix Published on www.kitjob.in 06 Aug 2023 About the internship Selected intern’s day-to-day responsibilities include: 1. Conduct research projects on health Informatics 2. Research on biotechnology & agriculture bioinformatics 3. Work on bioinformatics training & research Skill(s) required – Bioinformatics – Biology –…

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R Developer with AWS – 3S Business Corporation Inc.

R Developer w/ AWS Reston, VA or Washington, DC (tons of remote flex but must live in the area) Duration: 12+ months Duties & Responsibilities Assess, design, and build workflows to integrate solutions for scalable, reliable, and automated “R” analytics data science products on AWS Develop data science tool with…

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Bioinformatic Scientist (Hybrid) Job Opening in Gaithersburg, MD at Valted Seq, Inc.

Description    Valted Seq was founded in 2019 and is part of D&D Pharmatech / Neuraly family of companies. Valted Seq is a discovery stage biopharmaceutical company founded by scientists and physicians with a worldwide reputation in the field of neurodegenerative diseases. Our mission is to translate scientific discoveries in…

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RStudio adds Anaconda path even when System doesn’t? – RStudio IDE

I had some problems installing cmdstanr and tracked it down to my Rstudio path, e.g. Sys.getenv(). What’s interesting to me now is that my system does not use the conda paths anywhere, e.g. when I do echo($PATH) in a new zsh terminal shell, I don’t see the Anaconda path there….

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Bioinformatics Analyst Job in Minnesota

The Research Informatics (RI) Bioinformatics group within the University of Minnesota Supercomputing Institute (MSI) is hiring a full-time Bioinformatics Analyst to support basic biomedical and applied clinical genetic research for the Department of Laboratory Medicine and Pathology (LM&P) at the University of Minnesota. The analyst in this position will…

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LLM with Vertex AI only using SQL queries in BigQuery

Want to do quick Generative AI without writing much code, meeting your data where it is, only with SQL queries and without having to worry about security, privacy and compliance issues? BQML (BigQuery ML) helps you perform analytics on data stored in BigQuery using large language models (LLM) from Vertex…

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University of Canterbury hiring Bioinformatics Support Technician in Christchurch, Canterbury, New Zealand

Pūtaiao Koiora | School of Biological SciencesLocated in Ōtautahi | Christchurch, Aotearoa | New Zealand Part-time role at 18.75 hours per week (0.5 FTE) Continuing (permanent) position Generous annual leave provisions and professional development opportunities Āu Mahi | What You Will DoThe role of the Bioinformatics Support Technician is to…

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Bash script with command line options gets stuck and doesn’t set default values for variables

I am pretty green when it comes to bash scripts and completely new to command line functionality in bash. I tried my hand at a script which is supposed to be useable both with command line arguments as well as manual setting of variable values, if the user prefers to…

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Global Programming Software Market Size and Forecast

New Jersey, United States – Verified Market Research recently released a research report titled “Global Programming Software Market Insight, Forecast To 2030,” which assesses various factors influencing its trajectory. The report presents a high-quality, accurate, and comprehensive research study to provide players with valuable insights for making strategic business decisions. The…

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Hands-on course in genome sequencing, assembly, and downstream analyses

Registration includes: Course registration Course material Accommodation Lunches, dinner, coffee breaks Transportation (cards and/or bike rental) Welcome dinner, group excursion, social events Payment The selected participants will receive an e-mail with…

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Global Sodium Lauryl Ether Sulfate [SLES] Market Size and Forecast

New Jersey, United States – The Global Sodium Lauryl Ether Sulfate [SLES] market is projected to experience significant growth, as per the latest research report by Verified Market Research titled “Global Sodium Lauryl Ether Sulfate [SLES] Market Insights, Forecast to 2030.” The report presents a unique perspective on the global market….

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Data Engineer at European Molecular Biology Laboratory (EMBL)

About the team/job We are looking for a data engineer to join the International Mouse Phenotyping Consortium, as part of the EMBL-EBI Sample, Phenotypes and Ontologies team. The International Mouse Phenotyping Consortium (IMPC) is a G7 recognised global research infrastructure that coordinates the production and phenotyping of thousands of new…

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Nextflow files not referenced correctly when using wildcard in a for loop

Hi, I’m having some problems with my nextflow workflow when I use wildcards (*) to call in files. The files are created fine, (using process augment below) but when it is used by process snarls, it calls them as follows: CH-A2504_1.aug.gam -> workdir/2c/ce66a6417872a428111b7c2a5995d4/CH-A2504_01.aug.gam CH-A2504_1.aug.pg -> workdir/2c/ce66a6417872a428111b7c2a5995d4/CH-A2504_01.aug.pg … … CH-A2504_23.aug.gam ->…

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Bioinformatics Analyst III, Spatial Biology, CGR job with Frederick National Laboratory for Cancer Research

Bioinformatics Analyst III, Spatial Biology, CGR Job ID: req3667Employee Type: exempt full-timeDivision: Clinical Research ProgramFacility: Rockville: 9615 MedCtrDrLocation: 9615 Medical Center Drive, Rockville, MD 20850 USA The Frederick National Laboratory is a Federally Funded Research and Development Center (FFRDC) sponsored by the National Cancer Institute (NCI) and operated by Leidos…

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main-amd64-default][misc/py-pytorch] Failed for py39-pytorch-2.0.0_2 in configure

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/beefy18/data/main-amd64-default/p04fdfe963096_sc620788150/logs/py39-pytorch-2.0.0_2.log Build URL: pkg-status.freebsd.org/beefy18/build.html?mastername=main-amd64-default&build=p04fdfe963096_sc620788150 Log: =>> Building misc/py-pytorch build started at Sat Jul 29…

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Does Galaxy.org have a BQSR tool?

Does Galaxy.org have a BQSR tool? 0 Hi all! I’m creating a variant calling workflow/tutorial for biology students with no background in informatics, using almost exclusively the Galaxy platform tools. Now, I’m aware that I can easily teach them to run Rstudio, install GATK using the shell and run the…

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124amd64-quarterly][misc/pytorch] Failed for pytorch-1.13.1_1 in build

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/beefy2/data/124amd64-quarterly/1c331580481c/logs/pytorch-1.13.1_1.log Build URL: pkg-status.freebsd.org/beefy2/build.html?mastername=124amd64-quarterly&build=1c331580481c Log: =>> Building misc/pytorch build started at Thu Jul 27…

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python – How can I make my Slurm script loop over a list of file names?

I have a slurm script to run my python code: #!/bin/bash -l #SBATCH –nodes=1 #SBATCH –ntasks=1 #SBATCH –cpus-per-task=1 #SBATCH –mem=10G #SBATCH –account=my_account #SBATCH –qos=default #SBATCH –time=2-00:00:00 ###Array setup here #SBATCH –array=1 #SBATCH –open-mode=truncate #SBATCH –output=out_files/output.o module purge module load my_cluster module load Miniconda3/4.9.2 eval “$(${EBROOTMINICONDA3}/bin/conda shell.bash hook)” conda activate my_conda_env…

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r – Streamlining Multiple Open Scripts in RStudio into a Single Consolidated Script

You could make this a more robust function: list.files(pattern = “script\\d+.R”) |> lapply(readLines) |> unlist() |> paste(collapse = “\n”) |> writeLines(con = file(“appended.R”)) Script 1 # code comment df <- iris # code comment x <- “virginica” Script 2 df2 <- subset(df, Species == x) Script 3 write.csv(df2, “output.csv”) Output…

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Bioinformatics Analyst II (Remote) job with Collabera

Description Home Search Jobs Job Description Bioinformatics Analyst II (Remote) Contract: North Chicago , Illinois, US Salary: $55.00 Per Hour Job Code: 335000 End Date: 2023-07-24 Days Left: 1 days, 3 hours left Apply To discuss more about this job opportunity, please reach out to Chitrank Rastogi (LinkedIn URL –…

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Roche hiring Principal Bioinformatics Scientist in Mississauga, Ontario, Canada

The PositionPrincipal Bioinformatics ScientistWe are seeking a highly skilled and experienced Principal Bioinformatics Scientist specializing in Next Generation Sequencing (NGS) to join our research team. As a Computational Biologist in NGS, you will lead and contribute to cutting-edge projects focused on analyzing and interpreting NGS data, playing a pivotal role…

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Top Tools For Machine Learning Simplification And Standardization

Artificial intelligence and machine learning are two innovative leaders as the world benefits from technology’s draw to sectors globally. Choosing which tool to use can be difficult because so many have gained popularity in the market to stay competitive. You choose your future when you select a machine learning tool….

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Global Bioinformatics Services Market Size and Forecast

New Jersey, United States – The Global Bioinformatics Services Market is comprehensively and accurately detailed in the report, taking into consideration various factors such as competition, regional growth, segmentation, and market size by value and volume. This is an excellent research study specially compiled to provide the latest insights into critical aspects…

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Global Bioinformatics Market Size and Forecast

New Jersey, United States – The report on the Global Bioinformatics Market provides a comprehensive and accurate overview of the industry, considering various factors like competition, regional growth, segmentation, and market size in terms of value and volume. It serves as an exceptional research study, offering the latest insights into critical…

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Global Microbiome Sequencing Services Market Size and Forecast

New Jersey, United States – Verified Market Research recently released a research report titled “Global Microbiome Sequencing Services Market Insight, Forecast.” The report extensively discusses the Global Microbiome Sequencing Services market, offering readers a comprehensive understanding of key trends, top strategies, and potential growth opportunities. It incorporates Porter’s Five Forces analysis,…

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Conda/Mamba environment activation error

Conda/Mamba environment activation error 1 hey all, I have created a bash script that is below (i have already created environment named “blast” and installed blast in it) #!/bin/bash set -e #exit if command fails conda activate blast echo “blast help” blast -help conda deactivate when i make my “script.bash”…

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SnakeWRAP: a Snakemake workflow to facilitate automated processing of metagenomic data through the metaWRAP pipeline

doi: 10.12688/f1000research.108835.2. eCollection 2022. Affiliations Expand Affiliation 1 Department of Microbiology and Molecular Biology, Brigham Young University, Provo, UT, 84602, USA. Free PMC article Item in Clipboard John Krapohl et al. F1000Res. 2022. Free PMC article Show details Display options Display options Format AbstractPubMedPMID doi: 10.12688/f1000research.108835.2. eCollection 2022. Affiliation 1 Department…

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[slurm-users] Problem with srun on ARM Ubuntu servers

Hi, everyone. My team runs a SLURM cluster, currently SLURM17, but we are working to upgrade to 22, of about 800 servers. We currently have only x64 front-end servers, but we are looking to add some ARM servers. I have deployed some new ARM front end servers in exactly the…

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Bioinformatics Engineer – Hiring Urgently at Labcorp in Indianapolis, IN

We are in need of a competitive Bioinformatics Engineer to join our inspiring team at LabCorp in Indianapolis, IN.Growing your career as a Full Time Bioinformatics Engineer is an unparalleled opportunity to develop excellent skills.If you are strong in research, decision-making and have the right mindset for the job, then…

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Pytorch installed via pip does not pick up CUDA – Help

I have a simple shell.nix that picks up python3.9 from nix store and immediately enters Pythons virtualenv where I installed pytorch with CUDA support from pip (using Pytorch’s official instructions). with import <nixpkgs> {}; mkShell { buildInputs = [ stdenv.cc.cc.lib python39 python39Packages.pip ]; shellHook = ” # Add the library…

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[slurm-users] Notify users about job submit plugin actions

On 7/19/23 14:22, Lorenzo Bosio wrote: > I’m developing a job submit plugin to check if some conditions are met > before a job runs. > I’d need a way to notify the user about the plugin actions (i.e. why its > jobs was killed and what to do), but…

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R Studio Administrator – jobagent.ch

R Studio Administrator (for Support Engagement) Hybrid role: Basel location and home office Type: permanent role Industry: Life Sciences Keywords: Rstudio Workbench Admin, RStudio Connect, Rstudio Package Manager Admin   Responsibilities of the role: ·       Deploy and administrate Rstudio Workbench, RStudio Connect and Rstudio Package Manager ·       Building EasyBuild modules…

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Mathematics | Free Full-Text | A Study on Graph Centrality Measures of Different Diseases Due to DNA Sequencing

2.1. The Literature of Disease Network To begin, a broad range of phenotypes are associated with uncommon illness events, from those that are extremely cell-type or organ-specific to those that are more generalized, such as those related to heterogeneous syndromic disorders. Very little is known about how a genetic aberration…

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Using ‘Origami DNA’ to control virus assembly

Viral capsids can adopt various geometries, most iconically characterized by icosahedral or helical symmetries. Importantly, precise control over the size and shape of virus capsids would have advantages in developing new vaccines and delivery systems. However, current tools to direct the assembly process programmatically still need to be explored. Using…

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BEDOPS gtf2bed conversion error with Ensembl GTF

You can generate BED files (from e.g. GTF file of the Ensembl release) by executing the following command in Linux Shell: # For genes grep -P “\tgene\t” your_ensembl.gtf | cut -f1,4,5,7,9 | \ sed ‘s/[[:space:]]/\t/g’ | sed ‘s/[;|”]//g’ | \ awk -F $’\t’ ‘BEGIN { OFS=FS } { print $1,$2-1,$3,$6,”.”,$4,$10,$12,$14…

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How to create custom docker image to download bam files from SRA

How to create custom docker image to download bam files from SRA 1 I am trying to create a docker image from docker file and entrypoint. However, it only generates <none>:<none>. This is my docker file and entrypoint.sh. Would someone please let me know what’s missing here? FROM openjdk:8-jre LABEL…

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Singularity HPC Library

This module is a singularity container wrapper for quay.io/biocontainers/bioconductor-ceu1kgv. shpc-registry automated BioContainers addition for bioconductor-ceu1kgv After installing shpc you will want to install this container module: $ shpc install quay.io/biocontainers/bioconductor-ceu1kgv Or a specific version: $ shpc install quay.io/biocontainers/bioconductor-ceu1kgv:0.32.0–r40hdfd78af_1 And then you can tell lmod about your modules folder: And load…

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Problem installing Dependencies for R – JupyterHub

I am trying to set up an R env and install base packages for all users. The package lives on gitlab and I am using the following to install it. What happens is that during the deployment everything works fine and I can see this package being built and end…

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Best Large Language Models (LLMs)

Unveiling one of the best large language models, OpenAI’s ChatGPT, has provoked a competitive surge in the AI field. A diverse tapestry of participants, ranging from imposing corporate giants to ambitious startups, and extending to the altruistic open-source community, is deeply engrossed in the exciting endeavor to innovate the most…

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Bioinformatics Scientist job with Harvard University

62514BRAuto req ID:62514BRJob Code:RS0458 Bioinformaticist III Department Office Location:USA – MA – Cambridge Business Title:Bioinformatics ScientistSub-Unit:Sciences Salary Grade () :058Time Status:Full-time Union:00 – Non Union, Exempt or Temporary Basic Qualifications: Master’s degree in bioinformatics/computational biology or a related field with 5+ years of experience, or a PhD in bioinformatics, computational…

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Rstudio server in Snakemake

Rstudio server in Snakemake 0 Hello, I am new to using Snakemake and I am running a test script calling an R script. I work on a restricted server and I have access to a docker R studio server to run everything. However, it seems I am not able to…

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main-arm64-default][biology/mothur] Failed for mothur-1.48.0 in build

You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/ampere2/data/main-arm64-default/p8fb94260154e_s510fd83138/logs/mothur-1.48.0.log Build URL: pkg-status.freebsd.org/ampere2/build.html?mastername=main-arm64-default&build=p8fb94260154e_s510fd83138 Log: =>> Building biology/mothur build started at Mon Jul 17…

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