Tag: Shiny

lazy loading failed, unable to load shared object rtracklayer.so

Hello! I am working on analyzing a dataset I created with the 10x Chromium Single Cell Multiome kit. In order to add gene annotation to the ATAC data, I am trying to install and use the “EnsDb.Mmusculus.v79” and “BSgenome.Mmusculus.UCSC.mm10” packages with bioconductor. The same ERROR has come up repeatedly whenever…

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Shiny in Production Conference – RStudio

Shiny is a great way of building interactive web applications without having to have extensive web development knowledge – as long as you know the problem you’re trying to solve, have some ideas of how to display the data, and of course, a bit of R knowledge, you’re good to…

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Sr. Bioinformatics-Clinical Database Developer – CBL Path, Inc

Job Functions, Duties, Responsibilities and Position Qualifications: POSITION TITLE:Senior Bioinformatics-Clinical Database Developer STANDARDIZED JOB TITLE: Database Development, Web Application Development, and Clinical Analytics EXEMPT STATUS:  Exempt POSITION SUMMARY: Sr. Database Developer works with cross-functional groups & Medical Leadership for developing a databases for a clinical assays. The candidate is expected…

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Senior Scientist Applied Bioinformatics Job In San Francisco, CA 94103| TechCareers

At Bristol Myers Squibb, we are inspired by a single vision – transforming patients’ lives through science. In oncology, hematology, immunology and cardiovascular disease – and one of the most diverse and promising pipelines in the industry – each of our passionate colleagues contribute to innovations that drive meaningful change….

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Clickable Table of Contents in R Shiny – shiny

In pure HTML you would assign anchor names, and then you can write ancor href’s to make clickable links to them. I use that concept to extend your example. library(shiny) linebreaks<-function(x){ tagList(map(1:x,~br())) } ui <- fluidPage(sidebarLayout( sidebarPanel = sidebarPanel( h4(“Contents”), a(href=”#protag”, “Protagonists”) ),mainPanel = mainPanel( tabsetPanel( tabPanel(“Story”, fluidRow(column(width=2), column( h3(p(tags$em(“Introduction”),style=”color:black;text-align:left;…

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R programming language tutorials – Technical Ripon

Are you learning the R programming language? Want to learn how to do more tasks with R? Check out our Do More With R video tutorials below — most with accompanying text articles and code, almost all under 10 minutes. In the table below you can easily search all tutorials…

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Associate Bioinformatics Scientist at Flagship Pioneering, Inc.

Company Summary: Who Are We? Founded by Flagship Pioneering, Empress pioneers the future of small molecule drugs through the discovery of pharmacologic loci. The company’s product platform leverages AI and multi’omic data from thousands of humans around the globe to discover novel, important small molecules inside of humans and their cognate mechanisms…

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Director of Bioinformatics in Chicago, IL for University of Chicago (UC)

Details Posted: 03-May-22 Location: Chicago, Illinois Type: Full-time Salary: Open Categories: Research – Laboratory/Non-Laboratory Staff/Administrative Location: Hyde Park Campus Job Description: Provides technical expertise in the selection, validation, and implementation of the appropriate internal and external data analytic and bioinformatic solutions needed to analyze specimens, process and integrate data, and…

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Bioinformatics Scientist III – D3b at Children`s Hospital of Philadelphia

Job details Job type full-time Full job description Location: loc_roberts-roberts ctr pediatric research req id: 134035 shift: days employment status: regular – full time job summary the bioinformatics unit (bixu) within the center for data driven discovery (d3b) at the children’s hospital of philadelphia (chop) is seeking a level iii…

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subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38

subpopulations available in MafH5.gnomAD.v3.1.1.GRCh38 1 @b14a6f0d Last seen 16 hours ago United States Are subpopulation MAFs available for gnomADv.3.1.1 with any package, like they are in MafDb.gnomAD.r2.1.hs37d5? I’m trying to use Genomic Scores to obtain all variants in a genomic range with MAF in any subpopulation >= cutoff. I tried…

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Need help from a math quant. Must know R/Rstudio – Freelance Job in AI & Machine Learning – Less than 30 hrs/week – undefined

Part 1) Need help analyzing data and coming up with the most profitable portfolio possible Part 2) I need to get some simulations running as fast as possible. I have the code completely finished so I just need suggestions on how to make it better. Video available if needed. I…

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Bioconductor installation problems

Dear Friends, I have been having considerable difficulty doing various package related bioconductor actions. Here is my system specifications: ======================================================================= macOS Monterey Version: 12.3 (21E230) MacBook Pro (Retina, 13-inch, Early 2015) Memory: 16 GB 1867 MHz DDR3 RStudio 2021.09.0 Build 351 R version 4.1.2 (2021-11-01) — “Bird Hippie” Copyright (C)…

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Bioconductor Package Installation

When I try to install the gtf for hg38 BiocManager::install(“TxDb.Hsapiens.UCSC.hg38.knownGene”) I get the following error: ‘getOption(“repos”)’ replaces Bioconductor standard repositories, see ‘?repositories’ for details replacement repositories: CRAN: cran.rstudio.com/ Bioconductor version 3.14 (BiocManager 1.30.16), R 4.1.2 (2021-11-01) Installing package(s) ‘TxDb.Hsapiens.UCSC.hg38.knownGene’ Error in readRDS(dest) : error reading from connection Per stackoverflow.com/questions/67455984/getoptionrepos-replaces-bioconductor-standard-repositories-see-reposito I…

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Pathway analysis of RNAseq data using goseq package

Hello, I have finished the RNA seq analysis and I am trying to perform some pathway analysis. I have used the gage package and I was looking online about another package called goseq that takes into account length bias. However, when I run the code I get an error. How…

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rstudio::conf(2022) is open for registration!

rstudio::conf, the conference for all things R and RStudio, will take place July 25-28 in National Harbor, DC! As usual, we’ll have two days of workshops followed by two days of talks. If you’ve attended before and already know you want to attend, register now! Otherwise, read on to learn…

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Interactive Shiny App for Bulk Sequencing Data

calculate_condition_mean_sd_per_gene Calculate statistics for each gene of an expression matrix given a grouping crossPanel Generate the cross plot panel of the shiny app crossPanelServer Generate the cross plot panel of the shiny app crossPanelUI Generate the cross plot panel of the shiny app cross_plot Create a cross plot comparing differential…

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Bioconductor – pRolocGUI

    This package is for version 3.4 of Bioconductor; for the stable, up-to-date release version, see pRolocGUI. Interactive visualisation of spatial proteomics data Bioconductor version: 3.4 The package pRolocGUI comprises functions to interactively visualise organelle (spatial) proteomics data on the basis of pRoloc, pRolocdata and shiny. Author: Lisa M…

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Decision Tree Shiny App : RStudio

This would be a fairly simple Shiny app to build. Your best bet to start is with the Shiny documentation here, particularly the get started and gallery sections. You could try the book Mastering Shiny but that’s probably overkill for such a simple app. Note, to share this with your…

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SCHNAPPs – Single Cell sHiNy APPlication(s)

Abstract : Single-cell RNA-sequencing (scRNAseq) experiments are becoming a standard tool for bench-scientists to explore the cellular diversity present in all tissues. Data produced by scRNAseq is technically complex and requires analytical workflows that are an active field of bioinformatics research, whereas a wealth of biological background knowledge is needed…

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R-CoderDotCom | RCoderWeb – Github Help

R CODER’s Projects awesome-ggplot2 A curated list of awesome ggplot2 tutorials, packages etc. awesome-R A curated list of awesome R packages, frameworks and software. Awesome-R-packages A curated list 📄 of awesome 🌟 R packages 🌟 (WORK IN PROGRESS) calendR Ready to print calendars with ggplot2 chinchet A geom for adding…

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Bioconductor – rTRMui (development version)

DOI: 10.18129/B9.bioc.rTRMui     This is the development version of rTRMui; for the stable release version, see rTRMui. A shiny user interface for rTRM Bioconductor version: Development (3.15) This package provides a web interface to compute transcriptional regulatory modules with rTRM. Author: Diego Diez Maintainer: Diego Diez <diego10ruiz at gmail.com>…

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Bioconductor – TBSignatureProfiler (development version)

DOI: 10.18129/B9.bioc.TBSignatureProfiler     This is the development version of TBSignatureProfiler; for the stable release version, see TBSignatureProfiler. Profile RNA-Seq Data Using TB Pathway Signatures Bioconductor version: Development (3.15) Gene signatures of TB progression, TB disease, and other TB disease states have been validated and published previously. This package aggregates…

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