Tag: smallRNA

Standard for aligning smallRNA to a reference human rRNA?

Standard for aligning smallRNA to a reference human rRNA? 0 Hi, I need to label some smallRNA sequences that I know are rRNA fragments. I know that for mRNA these are discarded by aligning to the human genome and filtering out multimapped reads, but I need to try to pin…

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tReasure: R-based GUI package analyzing tRNA expression profiles from small RNA sequencing data | BMC Bioinformatics

tReasure (tRNA Expression Analysis Software Utilizing R for Easy use) is a graphical user interface (GUI) tool for the analysis of tRNA expression profiles from deep-sequencing data of small RNAs (small RNA-seq) using R packages. The whole analysis workflow, including the uploading of FASTQ files of small RNA-seq, quantification of…

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Bioconductor – mirTarRnaSeq

DOI: 10.18129/B9.bioc.mirTarRnaSeq     mirTarRnaSeq Bioconductor version: Release (3.14) mirTarRnaSeq R package can be used for interactive mRNA miRNA sequencing statistical analysis. This package utilizes expression or differential expression mRNA and miRNA sequencing results and performs interactive correlation and various GLMs (Regular GLM, Multivariate GLM, and Interaction GLMs ) analysis…

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small dimensions in the matrix of counts from smallRNA using DESEq2

small dimensions in the matrix of counts from smallRNA using DESEq2 1 @andreia-23745 Last seen 8 hours ago Portugal Hi there, I am doing smallRNA data analysis and I have a matrix of counts 17 miRNA and 16 samples I wonder if its correct to perform the results() from DESeq2…

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how to use old and new smallRNAseq data sets for data analysis

how to use old and new smallRNAseq data sets for data analysis 0 I have some smallRNAseq data (already sequenced) and would like to generate smallRNAseq from another few samples. but at the end I would like to include both new and old batches in the data analysis. For smallRNA…

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