Tag: smallRNAseq

smallRNA profiling using HTSeq error 1 Hello, I want to create a “count” file using HTseq. I have both BAM file and gtf file: htseq-count -f bam -s no -i AK1a_clean_Aligned.sortedByCoord.out.bam gencode.v42.chr_patch_hapl_scaff.annotation.gtf >> AK1a_counts.txt It still gives an error: htseq-count: error: the following arguments are required: featuresfilename Can someone please…

how to use old and new smallRNAseq data sets for data analysis 0 I have some smallRNAseq data (already sequenced) and would like to generate smallRNAseq from another few samples. but at the end I would like to include both new and old batches in the data analysis. For smallRNA…