Tag: SMAP

Ubuntu Manpage: gt-encseq-encode – Encode sequence files (FASTA/FASTQ, GenBank, EMBL) efficiently.

Provided by: genometools_1.6.5+ds-2_amd64 NAME gt-encseq-encode – Encode sequence files (FASTA/FASTQ, GenBank, EMBL) efficiently. SYNOPSIS gt encseq encode sequence_file [sequence_file [sequence_file …]] DESCRIPTION -showstats [yes|no] show compression results (default: no) -ssp [yes|no] output sequence separator positions to file (default: yes) -des [yes|no] output sequence descriptions to file (default: yes) -sds [yes|no]…

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Bug in element-wise multiplication of `torch.sparse_csr_tensor`s on GPU – 0’s in result considered significant

🐛 Describe the bug Problem:The problem occurs when using the PyTorch version 2.1.1. The result of element-wise multiplication between two torch.sparse_csr_tensors consider 0s as significant values and retain them in their sparse form. This is not the expected behavior. Moreover, this bug occurs only when the operation is run on…

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[Kernel-packages] [Bug 2007050] Autopkgtest regression report (initramfs-tools/0.142ubuntu15.1)

All autopkgtests for the newly accepted initramfs-tools (0.142ubuntu15.1) for mantic have finished running. The following regressions have been reported in tests triggered by the package: initramfs-tools/0.142ubuntu15.1 (armhf) Please visit the excuses page listed below and investigate the failures, proceeding afterwards as per the StableReleaseUpdates policy regarding autopkgtest regressions [1]. people.canonical.com/~ubuntu-archive/proposed-

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pytorch – torch.cuda.is_available() is False, when correct CUDA is installed. What could be wrong?

I’m having some trouble getting pytorch to access the GPU. I know that there is an agreement of the CUDA version (11.8). I leave some additional information below, does anyone know what is going on? In case it is relevant, I am working on an HPC. When connecting to the…

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Metabolite interactions in the bacterial Calvin cycle and implications for flux regulation

Cultivations and harvest Cupriavidus necator strain DSMZ 428 was grown in Ralstonia Minimal Media (RMM) with 100 mM HEPES pH 7.5 under chemostat conditions in a Photon Systems Instruments Multi-Cultivator MC-1000 OD. Each reactor tube was set up to a volume of 55 mL, OD600 0.05 and 3.5 g/L fructose. Once growth ceased,…

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python – dataloader Pytorch – View Loaded Data

I am trying to run the code of this a Transformer paper. I am loading the data into the data loader, but I want to pass loop across the batches and view the data. I am new to dataloader and I know that it is a simple process, but I…

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Soil biodiversity – DNA Bacteria and Fungi – ESDAC

The dataset includes 16S and ITS raw DNA sequences for 885 samples collected as part of LUCAS 2018 Soil survey2,3 for the biodiversity module. Raw DNA sequences are deposited on NCBI Sequence Read Archive (SRA) database under BioProject ID PRJNA952168. Samples from four locations were re-sampled, and thus sequenced twice,…

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How to run detectron2, as python embedded code in C++, on GPU?

I want to run detectron2 prediction as a Python Code embedded in a WebRTC C++ code. I am using webrtc-streamer as a C++ server in which I want to embed detectron2 Python code to call a prediction function. Everything works fine when I run the executable of webrtc-streamer and call…

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error when attempting to install qiime2 2023.2 – Technical Support

dnfarsi (Dominic Farsi) April 10, 2023, 11:14am 1 Hello I appear to be having a similar issue. However I don’t have the (core dumped). I am using Ubuntu 22.04 LTS and installed miniconda and then natively installed qiime2. When using any qiime command I get this illegal instruction. Interestingly it…

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[slurm-users] smap on Centos7

Hi, This is my first post. :-) Where can I find the ‘smap’ gui for Cenos7 ? I can’t seem to locate the package that provides this. I didn’t get any results with ‘yum whatprovides smap’. In contrast, ‘yum whatprovides sview’ gives me ‘slurm-gui’. Shouldn’t smap be part of…

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Bioconductor – SMAP

    This package is for version 2.14 of Bioconductor; for the stable, up-to-date release version, see SMAP. A Segmental Maximum A Posteriori Approach to Array-CGH Copy Number Profiling Bioconductor version: 2.14 Functions and classes for DNA copy number profiling of array-CGH data Author: Robin Andersson <robin.andersson at lcb.uu.se> Maintainer:…

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