Tag: SQL

Senior Software Developer (commencing immediately) at European Molecular Biology Laboratory (EMBL)

Contract Type: Staff Member Location: EMBL-EBI, Hinxton near Cambridge, UK Job Function: Senior Technical Officer (gr. 6-8) Contract Duration-Length of Time (years/months): 1 year (until grant-end date of 30/10/2023) Contract Duration-Is this renewable to 9 years?: No Advertised Grade-Grading: Grade 6 (monthly salary starting at £3,143.06 after tax plus benefits) About the team/job We are seeking…

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BAM – Job openings – Data Scientist for additive manufactruing (m/f/d) in the field of business informatics, computer science, software development, bioinformatics, engineering, data management, physics, data engineering or comparable

Section S.3 – eScience To strengthen our team in the division “eScience” in Berlin-Steglitz, starting as soon as possible, we are looking for a Data Scientist for additive manufactruing (m/f/d) in the field of business informatics, computer science, software development, bioinformatics, engineering, data management, physics, data engineering or comparable Salary…

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Bioinformatics Analyst at Dana-Farber Cancer Institute in 450 Brookline Ave, Boston, MA

Located in Boston and the surrounding communities, Dana-Farber Cancer Institute is a leader in life changing breakthroughs in cancer research and patient care. We are united in our mission of conquering cancer, HIV/AIDS and related diseases. We strive to create an inclusive, diverse, and equitable environment where we provide compassionate…

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python 3.x – PySpark on Jupyterhub K8s || Unable to query data || Class org.apache.hadoop.fs.s3a.S3AFileSystem not found

Pyspark Version: 2.4.5 Hive Version: 1.2 Hadoop Version: 2.7 AWS-SDK Jar: 1.7.4 Hadoop-AWS: 2.7.3 When I am trying to show data I am getting Class org.apache.hadoop.fs.s3a.S3AFileSystem not found while I am passing all the information which all are required. I passed all three for this config fs.s3.aws.credentials.provider org.apache.hadoop.fs.s3a.BasicAWSCredentialsProvider com.amazonaws.auth.InstanceProfileCredentialsProvider com.amazonaws.auth.EnvironmentVariableCredentialsProvider…

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Kaggle Archives | Fire Forty Six

It took me a while to finally complete all 17 modules, but knowing that there was a clear outcome helped motivate me to keep taking the next step, and the step after that. So, if you’re interested in getting a taste of what the world of machine learning has to…

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Database Administrator at European Molecular Biology Laboratory (EMBL)

About the team/job In this role you will join an established Database team of database administrators in order to support the ongoing database operations. The main duties for this post are: DBA of MySQL and MongoDB.The Database Team provides day-to-day Database Administration support , database performance tuning and query optimization…

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Director of Bioinformatics in Chicago, IL for University of Chicago (UC)

Details Posted: 03-May-22 Location: Chicago, Illinois Type: Full-time Salary: Open Categories: Research – Laboratory/Non-Laboratory Staff/Administrative Location: Hyde Park Campus Job Description: Provides technical expertise in the selection, validation, and implementation of the appropriate internal and external data analytic and bioinformatic solutions needed to analyze specimens, process and integrate data, and…

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BenchSci hiring Bioinformatics Engineer (Remote) in Toronto, Ontario, Canada

BenchSci’s vision is to bring novel medicine to patients 50% faster by 2025. We’re achieving it by empowering scientists with the world’s most advanced biomedical artificial intelligence. Backed by F-Prime, Gradient Ventures (Google’s AI fund), and Inovia Capital, our platform accelerates science at 15 top-20 pharmaceutical companies and over 4,300…

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Senior Scientist, Bioinformatics/Molecular Discovery job with Pfizer

Summary W e are seeking a talented laboratory informatics scientist to join Pfizer’s BioMedicine Design organization located in Cambridge, Massachusetts. The successful candidate will join a small team of computational biologists and software engineers to develop a broad array of fit for purpose computational and database tools in support of…

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Research Associate II, Bioinformatics at Sherlock Biosciences

Job details Salary $65,546 – $106,525 a year job type full-time Full job description Job description:Summary/objective: As part of this role, you will support the bioinformatics team in building a comprehensive bioinformatics software that informs the design of next generation molecular diagnosticsTogether with your mentor, you will refine and expand…

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Senior Research Associate/Principal Research Associate, Bioinformatics job with Vedanta Biosciences

Title: Senior Research Associate/Principal Research Associate, Bioinformatics Location: Cambridge, MA, or up to 100% remote Reports to: Scientist I, Bioinformatics The Role: We are looking for a bioinformatician/computational biologist to support the Research and Development team in the maintenance and querying of an existing laboratory information management system (LIMS), construction…

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Bioinformatics Analyst II – Remote in Danville, PA for Geisinger

Details Posted: 22-Apr-22 Location: Danville, Pennsylvania Type: Full Time Salary: Open Categories: Operations Job Summary Primary accountability is to leverage the organization’s data assets exome sequencing data (>180,000 individuals) from MyCode Community Health Initiative to improve quality, efficiency and generate knowledge specifically in the field of bioinformatics within health research….

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Bioinformatics Scientist for Whole Genome and Whole Exome Sequencing

** Bioinformatics Scientist for Whole Genome and Whole Exome Sequencing ** The NeuroGenomics and Informatics (NGI) Center lead by Dr. Carlos Cruchaga at Washington University School of Medicine is recruiting a Bioinformatics Scientist to work on Whole Genome and Whole Exome Sequencing. We are seeking an experienced, self-motivated, self-driven scientist…

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BioInformatics Product Manager at Helix (remote)

You + Helix Helix is a place where innovators and doers gather in order to drive significant progress in population genomics. We have come together to work at the intersection of clinical care, research, and genomics.   If you’re excited by the idea of making a meaningful impact and joining a…

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Programming skills in biocuration | EMBL-EBI Training

This webinar will be the first of our series of webinars on the topic of biocuration and discuss programming skills that can be beneficial in biocuration, as well as provide advice on how to acquire them. In an ELIXIR survey in 2019 which aimed at identifying training needs…

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Rangam Consultants Inc. Bioinformatics Analyst

This is a 100% Remote / Work From Home role Candidates can work 40 hours per week R exp needed 2-3 yrs of exp needed even with degree Biology knowledge Statistics analysis Need to upload process data to data base Masters degree will work Fresh Phd will also work Multi-omics…

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Research Biologist Computational Bioinformatics Geneticist Research Associate Job in PEORIA, IL

Summary The Agricultural Research Service (ARS) is the United States Department of Agriculture’s chief scientific research agency and one of the world’s premiere scientific organizations. ARS Postdoctoral Research Associates are hired to supplement a lead scientist’s research on agricultural problems of high national priority affecting American agriculture. **ANNOUNCEMENT IS OPEN…

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How can I connect to remote MSSQL server from jupyterHub notebook using windows authentication instead of MSSQL users? – Zero to JupyterHub on Kubernetes

I want to connect to Microsft SQL server database from jupyternotebook which is based on kubernetes z2jH installation, I made a cutome notebook image which has pyodbc & odbc inside, and could connect to MSSQL DB with sql user; however, it would be much easier to connect via Windows user…

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Discovery Life Sciences hiring Bioinformatics Scientist in Huntsville, Alabama, United States

The Bioinformatics Scientist will take lab-generated data and create computational models that allow further manipulation and experimentation, perform incremental analysis required to process large amounts of data generated in a high-throughput Next Generation Sequencing (NGS) laboratory devoted to analysis of genomics data with a focus on long- and short-read sequencing…

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Senior Bioinformatics Software Developer – Bethesda

Medical Science & Computing, (MSC), a Dovel company, is seeking skilled Senior Bioinformatics Software Developers to join our team supporting our client, NCBI at the National Institutes of Health, (NIH) in Bethesda, MD. The National Center for Biotechnology Information (NCBI) is part of the National Library of Medicine (NLM) at…

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Bioinformatics Specialist Job Opening in Aliso Viejo, CA at Ambry Genetics

JOB OVERVIEW: The main role of this position is project coordination, timeline management, and requirement gathering. To this end, the Bioinformatics Specialist analyzes and refines business and user requirements, and coordinates with developers to facilitate bioinformatics solutions through the entire SDLC, from discovery, design, development, and validation. The Bioinformatics Specialist…

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‘dataspell’ tag wiki – Stack Overflow

JetBrains DataSpell is an IDE for data science with intelligent Jupyter notebooks, interactive Python scripts, and lots of other built-in tools. The IDE for Professional Data Scientists DataSpell is an Integrated Development Environment (IDE) that is dedicated to specific tasks for exploratory data analysis and prototyping ML (machine learning)…

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How To Install RStudio IDE on Fedora 35

In this tutorial, we will show you how to install RStudio IDE on Fedora 35. For those of you who didn’t know, RStudio provides free and open-source tools for R and enterprise-ready professional software for data science teams to develop and share their work at scale. RStudio makes it easier…

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Jobot hiring Bioinformatics Scientist in St Louis, Missouri, United States

Bioinformatics Scientist – Agricultural DNA Extraction!This Jobot Job is hosted by Drew J. Fibus Are you a fit? Easy Apply now by clicking the “Apply” button and sending us your resume. Salary $75,000 – $130,000 per year A Bit About Us Based in St. Louis, MO with 2 offices across…

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Team Lead Comp Bio in Immunology & Respiratory job with Paramount Recruitment

Team Lead Computational Biology in Immunology & Respiratory – Germany Do you have experience in leading a team of computational biologists in immunology & respiratory? If so, then we have the perfect opportunity for you! One of our most highly respected pharmaceutical clients is now looking for a team leader…

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Principal/senior Bioinformatics Scientist (Hereditary Disease) – Portola Valley

We are looking for a highly motivated, senior level bioinformatics scientist with extensive experience and interest in translational genomic research, genetic analysis of complex traits, quantitative genetics, and/or algorithm/pipeline development. This position requires experience with scientific programming, relational data systems, algorithms development, and statistical modeling. Top candidates will also have…

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BioSpace hiring Scientist, Bioinformatics in Leonia, New Jersey, United States

We’re hiringBioinformatics Scientists with strong backgrounds in database development, management and analysis as they relate to human health and disease biomarkers, with the goal of improving disease prediction and prevention. With ICR, You’ll Get To Design, build, test and refine multiple large biomarker databases in collaboration with multiple ICR teams…

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org.intermine.sql.query.Query.addHaving java code examples | Tabnine

public void testHavingConstraintSet() throws Exception { q1 = new Query(“select table1.field1 from table1 group by table1.field1 having (table1.field1 = table1.field2 or table1.field1 = table1.field3)”); q2 = new Query(); Table t1 = new Table(“table1”); Field f1 = new Field(“field1”, t1); Field f2 = new Field(“field2”, t1); Field f3 = new Field(“field3”,…

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Gradle Build Error With Intellij

You can verify the problem is with Gradle scripts by running gradle help which executes configuration scripts but no Gradle tasks. If the error persists build. More examples on the classpath customization are available here. Tasks view and task execution. In the Eclipse IDE you can execute tasks from the…

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Bioinformatics Scientist – reed.co.uk

We are currently looking for a Bioinformatics Scientist to join a leading biotech company based in the Cambridge area. As the Bioinformatics Scientist you will drive the development of computational tools and perform omics data analysis to support target identification and therapeutics development platforms KEY DUTIES AND RESPONSIBILITIES: Your duties…

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Bioinformatics and Assay Development Scientist II – San Francisco, CA | South San Francisco, CA

Date posted: Sep 16, 2021 Bioinformatics and Assay Development Scientist II – San Francisco, CA The Monogram division of LabCorp, which is focused on high complexity cell-based assay development, has an exciting opportunity for a Scientist to join its R&D Diagnostics Development Team. The selected candidate will design, build and…

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Senior Bioinformatics Engineer | United States

Natera™ is a global leader in cell-free DNA (cfDNA) testing with a focus on women’s health, oncology, and organ health. To bolster our oncology products, we are looking for a Senior Bioinformatics Engineer to provide technical leadership and process guidance. Through collaboration between the product and development teams, the Senior…

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Bioinformatics Scientist Job Opening in Iowa City, IA at Jones Microbiology Institute Inc

Description: JMI Laboratories is a mid-sized company based in North Liberty, IA. A global leader for twenty years in anti-infectives research, JMI monitors annual changes in antibiotic resistance patterns through the SENTRY Antimicrobial Surveillance Program, serves as a clinical and reference laboratory in support of new drug development, and conducts…

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Senior Bioinformatics Data Scientist – Invitae

Location: San Francisco, CA or Remote in USA Invitae is dedicated to bringing comprehensive genetic information into mainstream medicine to improve healthcare for billions of people! Our team is driven to make a difference for the patients we serve. We are leading the transformation of the genetics industry by making…

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Higher Education Recruitment Consortium (HERC), HERC Jobs|Find Your Career Here

  UPDATE: We are in process of fixing some issues with our job board search function. If you are experiencing any problems, we apologize for the inconvenience and thank you for your patience. Job Seekers, Welcome to HERC Jobs…

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Sql Server Import From Excel With Sql, Duplicate Column Names

Explore LabKey Server’s specialized tools for assay data management below and read additional documentation on the LabKey support and documentation portal. Flow. Using SQL Search you can search for the column name and find all the stored procedures where it is used. Work faster. Finding anything in the Object Explorer….

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Quest Diagnostics hiring Staff Scientist – Bioinformatics and Computational Biology in Marlborough, Massachusetts, United States

Look for more than answers.At Quest, we are on a continuous journey of discovery and development. It’s this attitude that has made us an industry leader and the #1 Diagnostic Lab in the US. For those joining us, we offer exciting and fast-moving career opportunities where you can affect change…

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Manager, Bioinformatics – Brain Science job in Seattle, WA | Allen Institute for Brain Science

Manager, Bioinformatics Brain Science The mission of the Allen Institute is to unlock the complexities of bioscience and advance our knowledge to improve human health. Using an open science, multi-scale, team-oriented approach, the Allen Institute focuses on accelerating foundational research, developing standards and models, and cultivating new ideas to make…

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Bioinformatics Analyst – REMOTE – 2395 at Connexion Systems & Engineering

Connexion’s mission is to provide “best in class” services to job seekers. We strive to achieve excellence in job placement, staffing, and recruiting services, while treating candidates with the professionalism and respect they deserve. Title: Bioinformatics Analyst Hiring Organization: Connexion Systems & Engineering Compensation, Benefits, and Employment Type Duration: 6+…

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tabix for ID column

tabix for ID column 4 Hello, I’m looking for something similar to tabix. But instead of looking for informations within a given region, I would like to use the values in the ID column for quickly lookup. So for example I would like to take the compressed dbSNP file, index…

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Kaggle Learn Pandas

Listing Results Kaggle learn pandas Learn Pandas Tutorials Kaggle Learn Kaggle.com All Courses 5 hours agoPrepares you for these Learn Courses: Geospatial Analysis, Data Cleaning. Tags: pandas. Instructor. Aleksey Bilogur. Educator. Aleksey is a civic data specialist and … 1. Creating, Reading and WritingCreating, Reading and Writing | Kaggle2. Indexing,…

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Kaggle Mini Courses

Listing Results Kaggle mini courses Learn Python, Data Viz, Pandas & More Tutorials Kaggle Data Kaggle.com All Courses 8 hours agoPython Learn the most important language for data science. Intro to Machine Learning Learn the core ideas in machine learning, and build your first models. Intermediate Machine Learning Handle missing…

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Bioinformatics Systems Analyst – Job posted on PostdocJobs.com

Job Description Job-Specific Responsibilities The Department of Biomedical Informatics (DBMI) at Harvard Medical School is looking for a Bioinformatics Systems Analyst to help us build cutting-edge research platforms. We seek an individual to work on our multidisciplinary team of data scientists, medical doctors, post-doctoral fellows, project managers, and software developers….

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Clinical Bioinformatics Scientist/Engineer Job in Massachusetts (MA), Career, Full Time Jobs in Novartis Pharmaceuticals

6500 – The number of associates in the Novartis Institutes for BioMedical Research (NIBR). This division is the innovation engine of Novartis, focusing on powerful new technologies that have the potential to help produce therapeutic breakthroughs for patients. We are seeking a bioinformatics scientist to coordinate the processing and…

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Failed to open required defaults file mysql.cnf

Failed to open required defaults file mysql.cnf 0 Hi everyone. I know this may be a more general problem but I don’t know where to ask. I’m trying to run Stacks but this error keeps appearing: Failed to open required defaults file: usr/miniconda3/envs/genomevol/share/stacks/sql/mysql.cnf I’ve tried updating mysql, installing mysql-server instead…

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kaggle datasets for tableau

The homepage is full of small visualizations telling stories about each data set. This is the default Tableau location (if you’ve not changed) so far. Transformation processes can also be referred to as data wrangling, or data munging, transforming and mapping data from one raw data form into another format…

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Senior Bioinformatics Data Engineer – GRAIL

GRAIL is a healthcare company whose mission is to detect cancer early, when it can be cured. GRAIL is focused on alleviating the global burden of cancer by developing pioneering technology to detect and identify multiple deadly cancer types early. The company is using the power of next-generation sequencing, population-scale…

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Easy Way To Get 3′ Utr Lengths Of A List Of Genes

Easy Way To Get 3′ Utr Lengths Of A List Of Genes 4 Hi, as the title says really, I’m wondering if there is any tool available that would allow me to drop in a list of say entrez gene ids and get their corresponding 3′ UTR lenghts? Thanks for…

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Quest Diagnostics hiring Bioinformatics DevOps Engineer, remote in Alameda, California, United States

Look for more than answers. At Quest, we are on a continuous journey of discovery and development. It’s this attitude that has made us an industry leader and the #1 Diagnostic Lab in the US. For those joining us, we offer exciting and fast moving career opportunities where you can…

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Bioinformatics Engineer | San Carlos, CA

Date posted: Aug 28, 2021 Natera™ is a global leader in cell-free DNA (cfDNA) testing with a focus on women’s health, oncology, and organ health. To bolster our oncology solutions, we are looking for a Bioinformatics Engineer to provide analytical and data management support for Natera’s oncology product. The Bioinformatics…

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Twist Bioscience hiring Bioinformatics Scientist, Production Bioinformatics in South San Francisco, California, United States

Twist is looking for a Bioinformatics Scientist to join our Production Bioinformatics Team. You will work alongside research scientists, software engineers and data scientists to further deliver on our mission to expand access to best-in-class synthetic biology and next-generation sequencing applications. You will be developing and engineering tools to better…

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R cannot delete tmp file

R cannot delete tmp file 0 Hello guys, I am using R and more precisely the library taxonomisr to analyse some data. However I have an error message when running : taxaId<-accessionToTaxa(c(“LN847353.1″,”AL079352.3″),”accessionTaxa.sql”) The error is : Warning messages: 1: In file.remove(tmp) : impossible to delete the file ‘C:UserspdoinelAppDataLocalTempRtmpMNsOgYfile87c027271e99’, because of…

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Bioinformatics Analyst II in Danville, PA for Geisinger

Job Summary Primary accountability is to leverage the organization’s data assets exome sequencing data (>180,000 individuals) from MyCode Community Health Initiative to improve quality, efficiency and generate knowledge specifically in the field of bioinformatics within health research. Performs and supervises complex data extraction, transformation, visualization, and summarization to support Research…

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Bioinformatics Analyst in Pittsburgh, PA

Description Purpose: The UPMC Genome Center is a clinical grade, full-service, high-throughput genome center with sequencing options designed for both clinical and research needs. We are looking for members to join our Bioinformatics team for analysis of a wide spectrum (Whole Exome/Genome Germline and Somatic, RNAseq, scRNAseq) of NGS data…

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Northwestern University hiring Bioinformatics Analyst- Shilatifard Lab in Chicago, Illinois, United States

Department: MED-Biochem&Molecular Genetics Salary/Grade: EXS/8 Job Summary A Bioinformatician position is available in the Shilatifard laboratory in the Department of Biochemistry and Molecular Genetics at Northwestern University. Experience in the Next Generation Sequencing (NGS) is a pre-requisite, with background in bioinformatics, biostatistics, or computational biology. Bioinformatician will support current projects…

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Adjunct Faculty: Bioinformatics – Intro to Bioinformatics, Practical Computer Concepts for job with Johns Hopkins University

Johns Hopkins University Advanced Academic Programs Biotechnology Program Adjunct Faculty: Bioinformatics (Introduction to Bioinformatics, Practical Computer Concepts for Bioinformatics, Metagenomics) Institution Description: The Advanced Academic Programs (AAP) is a division of the Krieger School of Arts and Sciences at the Johns Hopkins University (JHU). As the nation’s oldest and one…

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Python first, then SQL? (Kaggle Question) : SQL

Hello everyone! I made a post on here a few days ago and I got a lot of good and helpful responses (thanks again!), and I have decided that this is infact what I want to pursue. I have found some sources for learning SQL, and one that I found…

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Team Lead Computational Biology in Immunology & Respiratory job with Paramount Recruitment

Team Lead Computational Biology in Immunology & Respiratory – Germany Do you have experience in leading a team of computational biologists in immunology & respiratory? If so, then we have the perfect opportunity for you! One of our most highly respected pharmaceutical clients is now looking for a team leader…

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Job: Sr Staff Bioinformatics Scientist, Emerging Solutions

Job Description Position Summary  The cost to sequence a human genome is rapidly decreasing and will approach $100 in the coming years. This is driving the creation of multi-omic data sets, population sequencing of multi-million sample human cohorts, gene expression profiles of millions of cells from a single sample, experiments…

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Genomics Data Scientist

Genomics Data Scientist – 93419 Organization: JG-Joint Genome Institute Lawrence Berkeley National Lab (LBL, lbl.gov/) Joint Genome Institute (JGI, jgi.doe.gov/) Division has an opening for a Genomics Data Scientist. This is an exciting opportunity for applying your data science expertise in genomics to solve the most challenging energy and environmental…

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