Tag: Staden Package

The Staden Package Mini-Manual – Gap-Intro-Interface-CJ

In this figure the Cutoff or Hidden data is being displayed for the right hand contig. One difference between the Contig Editor and the Join Editor is the Lock button. When set (as it is in the illustration) the two contigs scroll in register, otherwise they can be scrolled independently….

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The Staden Package Mini-Manual – Viewing Traces Using Trev

The Staden Package Mini-Manual – Viewing Traces Using Trev For some types of sequencing project it is convenient to view and edit the chromatogram data prior to assembly into a gap4 database, and this is the function of the program trev. Trev displays the original trace data, its base calls…

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Debian — Details of package staden-io-lib-examples in bullseye

programs for manipulating DNA sequencing files (usage examples) The io_lib from the Staden package is a library of file reading and writing code to provide a general purpose trace file (and Experiment File) reading interface. It has been compiled and tested on a variety of unix systems, MacOS X and MS…

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