Tag: .tar.gz

Bioconductor URI, fallback and time-machine

Hi,On Tue, 03 Mar 2020 at 16:59, zimoun <zimon.toutoune@gmail.com> wrote: Toggle quote (17 lines) > Currently, the URI scheme (see ‘bioconductor-uri’ in> guix/build-system/r.scm) is:>> bioconductor.org/packages/release/data/<type-url-part>/src/contrib/<upstream-name>-<version&gt;.tar.gz>> which leads to 2 issues:>> 1. when Bioconductor updates their release, some package versions are> updated too, and so, the upstream return 404.> 2. for…

Continue Reading Bioconductor URI, fallback and time-machine

More than one archive specified. Try –help.

Package: routine-update Version: 0.0.6 Severity: important Hi Andreas, when working on making sure the python-biopython watch file was appropriately fixed, I saw routine-update choke with the following error: $ routine-update gbp:info: Fetching from default remote for each branch gbp:info: Branch ‘master’ is already up to date. gbp:info: Branch ‘pristine-tar’ is already up to date. gbp:info: Branch…

Continue Reading More than one archive specified. Try –help.

.tar.gz = same size as before?

BAM compression: .tar.gz = same size as before? 2 I tried to compress 5 bam files using: tar -czvf original_bams.tar.gz *.bam The resulting file sizes (“ll –block-size=M”) are: 8067M file1.bam 6962M file2.bam 10662M file3.bam 7794M file4.bam 7346M file5.bam 40828M original_bams.tar.gz There’s a difference of 3MB between the archive and the…

Continue Reading .tar.gz = same size as before?