Tag: tblastx

BLAST WASM

BLAST is a family of tools used to compare biological sequences, such as protein or DNA sequences, against a database of sequences. It is used in bioinformatics applications, including genome annotation, gene discovery, and phylogenetic analysis of DNA and protein sequences. The BLAST source code is written in C++ and…

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BLAST (Bioinformatics)- Definition, 5 Types, Steps, Uses

With the increase in DNA and protein sequence databases, there is a growing need for more faster and efficient methods to analyze this large amount of data. One of the most commonly used bioinformatics tools today to study DNA and protein sequences is called BLAST.  BLAST stands for Basic Local…

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Ubuntu Manpage: Bio::Tools::Run::StandAloneNCBIBlast – Object for the local execution of the NCBI BLAST

Provided by: libbio-perl-run-perl_1.7.3-8_all NAME Bio::Tools::Run::StandAloneNCBIBlast – Object for the local execution of the NCBI BLAST program suite (blastall, blastpgp, bl2seq). With experimental support for NCBI rpsblast. SYNOPSIS # Do not use directly; see Bio::Tools::Run::StandAloneBlast DESCRIPTION See Bio::Tools::Run::StandAloneBlast FEEDBACK Mailing Lists User feedback is an integral part of the evolution of…

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BLAST Basic Local Alignment Search Tool

Keywords BLAST, bioinformatics, heuristic algorithm, program, biological sequence, proteins, nucleotides, database sequences, maximal segment pair, alignments, DNA and RNA sequences. Introduction BLAST (basic local alignment search tool) in bioinformatics, is an algorithm and program for comparing primary biological sequence information, such as the amino acid sequences of proteins or the…

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| EasyBiologyClass

Bioinformatics is an interdisciplinary field that analyzes and interprets biological data by combining biology, computer science, and statistics. There are various tools and techniques available for data analysis and interpretation. The software tools used in bioinformatics range from simple command-line utilities to more complex graphical programs and standalone web-services made…

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An intronic transposon insertion associates with a trans-species color polymorphism in Midas cichlid fishes

Conflicting results suggest a missing variant In order to narrow down candidates for the causal genetic variant, we performed genome-wide association mapping separately in individual lake populations (previously, association mapping was only performed across the whole species flock5). Interestingly, despite clear association peaks in the crater lakes (Fig. 1a, b), the…

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blastx versus tblastx

hello everyone I have a question about the blast. I admit that I do not understand everything. I have been asked to blastx an fsa file of arabidopsis thaliana sequences against an oak gene model. In order to see if there were any matching sequences between the two species: My…

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