Tag: TFBSTools

Bioconductor – JASPAR2020 (development version)

DOI: 10.18129/B9.bioc.JASPAR2020   This is the development version of JASPAR2020; for the stable release version, see JASPAR2020. Data package for JASPAR database (version 2020) Bioconductor version: Development (3.18) Data package for JASPAR2020. To search this databases, please use the package TFBSTools (>= 1.23.1). Author: Damir Baranasic <damir.baranasic at lms.mrc.ac.uk> Maintainer:…

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Bioconductor – ATACCoGAPS

DOI: 10.18129/B9.bioc.ATACCoGAPS   Analysis Tools for scATACseq Data with CoGAPS Bioconductor version: Release (3.17) Provides tools for running the CoGAPS algorithm (Fertig et al, 2010) on single-cell ATAC sequencing data and analysis of the results. Can be used to perform analyses at the level of genes, motifs, TFs, or pathways….

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Bioconductor – monaLisa

DOI: 10.18129/B9.bioc.monaLisa     Binned Motif Enrichment Analysis and Visualization Bioconductor version: Release (3.14) Useful functions to work with sequence motifs in the analysis of genomics data. These include methods to annotate genomic regions or sequences with predicted motif hits and to identify motifs that drive observed changes in accessibility…

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