Tag: TOM

BBC’s jab travesty and the critics who will not be fobbed off

HAS the BBC’s complaints system finally come up against a foe that won’t be put off? A brief history of complaints about the travesty of a BBC documentary, Unvaccinated, proudly promoted in July, suggests it may well have.  The programme, presented by Professor Hannah Fry, signalled its bias from the start. Tom Coveney,…

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A global collaboration to map the whole human brain

Baylor College of Medicine researchers in the Tolias Lab and the Xiaolong Jiang Lab are part of a global collaborative led by the Allen Institute to map the whole human brain. In what is being called the brain equivalent of the Human Genome Project, this initiative will map 200 billion cells in the human brain by…

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Did Stacey Dash bleach her skin? Here are before and after photos after what looks like skin lightening

Did Stacey Dash bleach her skin? Here are before and after photos after what looks like skin lightening Hello Everyone lastest Update about Did Stacey Dash bleach her skin? Here are before and after photos after what looks like skin lightening Welcome guys to Bulletinzone.com . Here you can Find…

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DNA from human remains found in medieval well shines new light on Jewish history

In 2004 archaeological excavations in central Norwich uncovered a medieval well containing the remains of at least 17 people, mostly children.  Scientists analysed DNA from the remains of six of these individuals, findingstrong genetic affinities with modern Ashkenazi Jews, making them the oldest Jewish genomes to have been sequenced. New…

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XAY Delta-Omicon recombinant under observation

A new SARS-CoV-2 recombinant lineage from South Africa has been highlighted by Tulio de Oliveira, Director of the Centre for Epidemic Response & Innovation in South Africa today. The Delta/Omicron recombinant was first identified on the 28 June 2022 and designated as XAY on the 25th August 2022 Early, I…

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Several genes were lost during mammoth evolution.

One way to revive extinct species is the so-called Crispr-Cas9 genetic scissors. Genome editing technology can be used to insert genetic variants from extinct species into the genome, the entire genome, of a living relative. But the results of a new study suggest that it may also be necessary to…

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Postdoctoral researcher (24513) – Plant Biotechnology and Bioinformatics

   →  Apply before 21/08/2022 (DD/MM/YYYY) 23:59 (Brussels Time)   →  Department: WE09 – Plantenbiotechnologie en Bio-informatica   →  Occupancy rate:100%   →  Number of positions: 1       →  Type of employment: Contract of unlimited duration with clause    →  Term of assignment: Minimum 3 jaar – maximum 6 jaar    →  Wage scale:  PD1 to PD4 (doctoral degree)    →  Required diploma: PhD   ABOUT GHENT UNIVERSITY Ghent University is a world…

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Plant-based Expression Systems are Gaining Mainstream Advantage

Industry adoption of plant-made biologics remains slow, but plant-based technology gains an advantage by mainstream exposure. While Chinese hamster ovary (CHO) cells are the workhorse of biologics production, other cell expression systems are starting to gain ground, such as plant-based expression systems. Though an older technology in and of itself,…

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New CRISPR-Based Map Opens Door to New Genetic Testing, Therapeutic Possibilities

Researchers from all around the world have been working on mapping human genes to their functions. Now, for the first time, that mapping has been completed, and it opens the doors for all kinds of genetic testing and medicinal possibilities. In 2003, members of the Human Genome Project completely sequenced…

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The modules are not clustered together after WGCNA

The modules are not clustered together after WGCNA 0 I am running WGCNA and trying to visualize the gene network as TOM plot. Rather than using the native function in the package, I am looking for plotting it out by ggplot. The main reason is I would like to also…

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Endometriosis-related functional modules and hub genes

Introduction Endometriosis (EMS) is a chronic gynecological disease defined as implantation and periodic growth of the endometrial glands and stroma outside the uterine cavity, causing chronic pelvic pain, severe dysmenorrhea, and infertility in 10% reproductive-age women, among which the infertility rate is approximately 30–50%.1,2 Surgical excision is commonly used for…

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assign in pandas pipeline – DevDreamz

You can use pipe: tmp_df = df.\ drop(“Gene type”, axis=1).\ rename(columns = { “Gene stable ID”: “ENSG”, “Gene name”: “gene_name”, “miRBase accession”: “MI”, “miRBase ID”: “mirna_name” }).\ pipe(lambda x: x.assign(species = x.mirna_name.str[:3])) tmp_df Out[365]: ENSG gene_name MI mirna_name species 0 ENSG00000274494 MIR6832 MI0022677 hsa-mir-6832 hsa 1 ENSG00000283386 MIR4659B MI0017291 hsa-mir-4659b…

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Measurement of Protein Import Capacity of Skeletal Muscle Mitochondria

Mitochondria are key metabolic organelles that exhibit a high level of phenotypic plasticity in skeletal muscle. The import of proteins from the cytosol is a critical pathway for organelle biogenesis, essential for the expansion of the reticulum and the maintenance of mitochondrial function. Therefore, protein import serves as a barometer…

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Browsing by Author “Plowman, Nichola S.”

Ewers, Robert M.; Boyle, Michael J.W.; Gleave, Rosalind A.; Plowman, Nichola S.; Benedick, Suzan; Bernard, Henry; Bishop, Tom R.; Bakhtiar, Effendi Y.; Chey, Vun Khen; Chung, Arthur Y.C.; Davies, Richard G.; Edwards, David P.; Eggleton, Paul; Fayle, Tom M.; Hardwick, Stephen R.; Homathevi, Rahman; Kitching, Roger L.; Khoo, Min Sheng;…

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DNAnexus Secures $200 Million Funding Led by Blackstone Growth to Advance its Biomedical Data-Driven Technology Platform for Precision Medicine

MOUNTAIN VIEW, Calif.–(BUSINESS WIRE)–#Bioinformatics—DNAnexus, Inc., a leading provider of cloud-based biomedical data analysis software serving the life sciences community, today announced a $200 million financing round to accelerate the global adoption of its technology, translating the world’s complex multi-omics and clinical data into tangible insights and personalized treatments. The round…

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RNA-seq workshop: from reads to differentially expressed genes Registration, Mon 28/03/2022 at 10:00 am

Expression of interest for hands on workshop: RNA-seq analysis: from reads to differentially expressed genes. Workshop dates/times (Melbourne time): March 28th and 29th 10am-1pm EOI deadline 5pm Monday 14th March Successful applicants notified: Friday 18th March Lead trainers: Jessica Chung (Melbourne Bioinformatics, The University of Melbourne) Tom Harrop (Melbourne Bioinformatics,…

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Validea Motley Fool Strategy Daily Upgrade Report – 2/26/2022

The following are today’s upgrades for Validea’s Small-Cap Growth Investor model based on the published strategy of Motley Fool. This strategy looks for small cap growth stocks with solid fundamentals and strong price performance. EXLSERVICE HOLDINGS, INC. (EXLS) is a mid-cap growth stock in the Business Services industry. The rating…

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Axi-cel CAR-T significantly improves EFS among older patients with non-Hodgkin lymphoma

February 16, 2022 3 min read Source/Disclosures Published by: Source: van Meerten T, et al. Abstract PT02-1. Presented at: European Society for Blood and Marrow Transplantation-European Hematology Association 4th European CAR T-cell Meeting (virtual meeting); Feb. 10-12, 2022. Disclosures: van Meerten reports honoraria from Kite Pharma and…

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Flow Cytometry Technique Enables High-Speed Cell Sorting | Research & Technology | Jan 2022

FRANKLIN LAKES, N.J., Jan. 24, 2022 — A study led by global medical technology company BD (Becton, Dickinson, and Co.), in collaboration with the European Molecular Biology Laboratory (EMBL), has demonstrated an innovation in flow cytometry that adds fluorescence imaging and image-based fluorescence to sort individual cells at exceptionally high…

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BD unveils high-throughput cell sorter that merges fluorescence with visual imaging

For researchers trying to find a single type of cell among tens of thousands, BD has outlined a new high-speed sorting technology that could help do more than just find the proverbial needle in the haystack, but also categorize each individual strand of hay itself. By combining flow cytometry methods…

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Bioconductor – ChIPQC

    This package is for version 3.1 of Bioconductor; for the stable, up-to-date release version, see ChIPQC. Quality metrics for ChIPseq data Bioconductor version: 3.1 Quality metrics for ChIPseq data Author: Tom Carroll, Wei Liu, Ines de Santiago, Rory Stark Maintainer: Tom Carroll <tc.infomatics at gmail.com>, Rory Stark <rory.stark…

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assign in pandas pipeline – Stackify

You can use pipe: tmp_df = df. drop(“Gene type”, axis=1). rename(columns = { “Gene stable ID”: “ENSG”, “Gene name”: “gene_name”, “miRBase accession”: “MI”, “miRBase ID”: “mirna_name” }). pipe(lambda x: x.assign(species = x.mirna_name.str[:3])) tmp_df Out[365]: ENSG gene_name MI mirna_name species 0 ENSG00000274494 MIR6832 MI0022677 hsa-mir-6832 hsa 1 ENSG00000283386 MIR4659B MI0017291 hsa-mir-4659b…

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[PATCH net-next v2 3/3] net: amd-xgbe: Disable the CDR workaround path for Yellow Carp Devices

[PATCH net-next v2 3/3] net: amd-xgbe: Disable the CDR workaround path for Yellow Carp Devices – Raju Rangoju From: Raju Rangoju <rrangoju@amd.com> To: <thomas.lendacky@amd.com>, <davem@davemloft.net>, <kuba@kernel.org> Cc: <netdev@vger.kernel.org>, <Shyam-sundar.S-k@amd.com>, <Sudheesh.Mavila@amd.com>, <Raju.Rangoju@amd.com> Subject: [PATCH net-next v2 3/3] net: amd-xgbe: Disable the CDR workaround path for Yellow Carp Devices Date: Mon, 20…

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Adrenal aldosterone-producing adenoma | IJGM

Background Primary hyperaldosteronism (PA) is characterized by spontaneous secretion of excessive aldosterone and inhibition of plasma renin activity.1 The pathogenesis of adrenal aldosterone-producing adenoma (APA) involves the abnormal proliferation of adrenal cortex cells and the excessive secretion of aldosterone, accounting for nearly 30% of PA. Excessive secretion of aldosterone can…

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Re: [PATCH net-next 1/3] net: amd-xgbe: Add Support for Yellow Carp Ethernet device

Re: [PATCH net-next 1/3] net: amd-xgbe: Add Support for Yellow Carp Ethernet device – Tom Lendacky From: Tom Lendacky <thomas.lendacky@amd.com> To: Raju Rangoju <rrangoju@amd.com>, davem@davemloft.net, kuba@kernel.org Cc: netdev@vger.kernel.org, Shyam-sundar.S-k@amd.com, Sudheesh.Mavila@amd.com, Raju.Rangoju@amd.com Subject: Re: [PATCH net-next 1/3] net: amd-xgbe: Add Support for Yellow Carp Ethernet device Date: Fri, 17 Dec 2021…

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Issue with running SpringBoot Application using AWS Lambda in SAMCLI

Hello Team, I am not able to test springboot applilcation with AWS lambda in my local using SAM CLI, because it generates classes with very long names , which the SAM Cli is not able to copy tom tmp folder, when deploying as a docker container and I get an…

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How to get a probability distribution over tokens in a huggingface model? : pytorch

I’m following this tutorial on getting predictions over masked words. The reason I’m using this one is because it seems to be working with several masked word simultaneously while other approaches I tried could only take 1 masked word at a time. The code: from transformers import RobertaTokenizer, RobertaForMaskedLM import…

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M2GEN Announces Collaboration with Microsoft to Advance Bioinformatics Solutions for Oncology

  TAMPA, Fla., Dec. 9, 2021 /PRNewswire/ — M2Gen, a bioinformatics company accelerating discoveries in oncology research through superior data and analytics, today announced it is partnering with Microsoft to advance and scale its unique data-driven solutions for the discovery, research and development of new oncology therapies….

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M2GEN Announces Collaboration with Microsoft to Advance Bioinformatics Solutions for Oncology | News

TAMPA, Fla., Dec. 9, 2021 /PRNewswire/ — M2GEN, a bioinformatics company accelerating discoveries in oncology research through superior data and analytics, today announced it is partnering with Microsoft to advance and scale its unique data-driven solutions for the discovery, research and development of new oncology therapies. The collaboration  brings together…

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Boundary-pushing research projects boosted by President’s Excellence Fund | Imperial News

Projects making nanomagnetic computers, sustainable packaging, improved vaccine carriers, and cut-and-paste chemistry have won up to £250k each. Four teams have received funds from the Excellence Fund for Frontier Research (EFFR) this year which are awarded as part of the College’s strategic aim of acting courageously. The awards are designed to…

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The Role Of Process Integration

Article | By Ahmed Besheer, Lonza As the field of biologics increases its focus on identifying new diseases to target and novel constructs to treat them, innovative administration devices are once again in the spotlight. Article | By Bruce C. Simpson, Thermo Fisher Scientific Due to the complexity and temperature sensitivity…

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VC Daily: Debut Fundraising Success Rate

Good day. Debut fund managers are gaining more confidence and striking out to raise funds, as WSJ Pro recently reported. But what’s their likelihood of success? Fairview Capital, which invests in venture funds, analyzed a pipeline of debut venture funds owned by women or minority managers who were raising between…

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Gradle Build Error With Intellij

You can verify the problem is with Gradle scripts by running gradle help which executes configuration scripts but no Gradle tasks. If the error persists build. More examples on the classpath customization are available here. Tasks view and task execution. In the Eclipse IDE you can execute tasks from the…

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scarlet star plant propagation

Humidity – high, Air Plants, Bromeliads, Flowering Plants, Foliage Plants, Garden Plants, Indoor Plants Keep geraniums in winter. For medium sized aquariums it is much better placed as a midground plant only use as a background plant in smaller aquariums. Another nice aspect of . In their natural habitat, most…

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203: The Capacity For Innovation

This season of “The Switch” is focused on the mechanics of ETFs. In this episode, host Ren Leggi, Client Portfolio Manager for ARK Invest, and ETF Trends’a CEO Tom Lydon and CIO Dave Nadig discuss the capacity for innovation, in a market environment that offers so much investment potential. With assets…

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Tau t gromacs manual

Tau t gromacs manual TAU at TACC – TACC User PortalBiomolecules | Free Full-Text | Electrostatics of Tau GN Drive Tau | The Gundam Wiki | Fandom Kirk took a break and sent out for coffee when a patrolman brought him…

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Embrace WDNA as BioRevolution Gains Momentum

Investors looking for innovative companies and disruptive growth opportunities without excessive exposure to the technology sector would do well to check out healthcare. Arguably, healthcare is the most innovative sector aside from tech and the one with the next largest arena of disruptive growth opportunities. However, many traditional healthcare exchange…

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Google Getting Into Genomics? It Already Is

Google parent Alphabet (NASDAQ:GOOG) has a long history of disruption and one that extends far beyond internet search and advertising. As such, it’s not surprising that the stock makes appearances in exchange traded funds such as the ARK Space Exploration and Innovation ETF (ARKX) and the ARK Autonomous Technology &…

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BGI prenatal gene test under scrutiny for Chinese military links

By Clare Baldwin and Kirsty Needham Sept 6 (Reuters) – Health regulators in five countries are examining a prenatal test that collects the DNA of women and fetuses for research, while some doctors that promoted it and clinics that sell it say they were unaware the company that produces it…

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nanopore sequencing stock

It holds a 15% stake in the company and has valued its holding at £340m, giving a valuation of more than £2bn for the company. . While the company’s current shareholders have recorded its value at just over £2bn, analysts . Essay from the year 2011 in the subject Business…

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Quanta Magazine

Imagine the human genome as a string stretching out for the length of a football field, with all the genes that encode proteins clustered at the end near your feet. Take two big steps forward; all the protein information is now behind you. The human genome has three billion base…

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How does MetaProdigal handle metagenomics where different genetic codes are used?

How does MetaProdigal handle metagenomics where different genetic codes are used? 1 I’m wondering how prodigal when using -p meta can handle genes from different genetic codes? For example, if Gracilibacteria/SR1 was in there it would use genetic code 25. Would it catch this? When running in meta mode does…

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Getting data from TOM matrix (WGCNA)

Getting data from TOM matrix (WGCNA) 0 Hello, I would like to access the correlation in TOM matrix of a specific subset of genes. Manually, as it is a matrix, there’re no row/column names so I can’t identify the genes I’m looking for. In the manual, I’ve seen the function…

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Fish on its way to new shores

Ice Age bones reveal how sticklebacks adapt to new habitats Three-spined sticklebacks live in both salt and fresh water. When the glaciers melted at the end of the last ice age and new lakes were formed, sticklebacks from the sea found new habitats in them. Felicity Jones and her team…

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Converting mouse Gene IDs to Human while keeping genes that don’t convert

Hi there, I am using bioMart to convert some gene IDs from mouse to human for some data I generated through RNA-seq. I am currently mapping using the following function: convertMouseGeneList <- function(x){ require(“biomaRt”) human = useMart(“ensembl”, dataset = “hsapiens_gene_ensembl”) mouse = useMart(“ensembl”, dataset = “mmusculus_gene_ensembl”) genesV2 = getLDS(attributes =…

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