Tag: UCSF

Modeling an Enzyme Active Site using Molecular Visualization Freeware

Visualizing biological macromolecules is a critical skill for students and professionals in the biological sciences. In this protocol, we demonstrate how to model the active site of the enzyme glucokinase using four freely available programs for molecular modeling. This tutorial highlights several steps of the protocol for each program, which…

Continue Reading Modeling an Enzyme Active Site using Molecular Visualization Freeware

Bioconductor – HEEBOdata

    This package is for version 2.9 of Bioconductor; for the stable, up-to-date release version, see HEEBOdata. HEEBO set and HEEBO controls. Bioconductor version: 2.9 R objects describing the HEEBO oligo set. Author: Agnes Paquet Maintainer: Agnes Paquet <apaquet at medsfgh.ucsf.edu> Citation (from within R, enter citation(“HEEBOdata”)): Installation To…

Continue Reading Bioconductor – HEEBOdata

Biology Career Job Links

Web Resources Virtualab Home AgricultureBioinformaticsBiophysicsCancerCareerCellBiologyDevelopmentEcologyEducationFunGeneticsGenomicsHealthLabMicrobiologyMolecularMoleculeNeurosciencesPaleontologyPlantPolicySociety Instructionsupplierprotocol… Career Links AACC Onlin – American Association of Clinical Chemistry career center. Academia : Job listings in academia, major US universities, and positions in Australia, Canada, and Europe. Academic Employment Network: US academic positions. Academic network : Jobs in higher education. Academic, Physician…

Continue Reading Biology Career Job Links

Bioconductor – marray

    This package is for version 2.13 of Bioconductor; for the stable, up-to-date release version, see marray. Exploratory analysis for two-color spotted microarray data Bioconductor version: 2.13 Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking. Author: Yee Hwa (Jean) Yang…

Continue Reading Bioconductor – marray

Junior Biostatistics Analyst job with University of California, San Francisco

Job Code and Payroll Title009403 BIOINFORMATICS PROGR 1 Job SummaryA smart hardworking individual with very strong communication and organizational skills is sought by the UCSF MS EPIC Study to serve as a Junior Biostatistics Analyst. Under direct supervision, individual will apply professional bioinformatics concepts and computational procedures to complete projects related…

Continue Reading Junior Biostatistics Analyst job with University of California, San Francisco

R Bioconductor Courses

Listing Results R bioconductor courses Bioconductor Introduction To R / Bioconductor Harvard Bioconductor.org All Courses 016-05-16 Just NowIntroduction to R / Bioconductor. Buffalo, NY. 2016-05-16 ~ 2016-05-17. Instructors. Martin Morgan; Lori Shepherd; Description. This is a two-day course introducing R and Bioconductor for the analysis and comprehension of high-throughput genomic…

Continue Reading R Bioconductor Courses

How to download data for visualising and analysing in RINalyzer in Cytoscape.

How to download data for visualising and analysing in RINalyzer in Cytoscape. 1 I am new to this plugin in Cytoscape. I want to visualise RIN from pdb and analyze the network. According to the tutorial we can download daat from RIN data websever. But when I am trying to…

Continue Reading How to download data for visualising and analysing in RINalyzer in Cytoscape.

New Techniques and Complex Models

CRISPR systems that rely on inactivated Cas enzymes—that is, dead Cas (dCas) enzymes—never looked more alive. They harness the targeting power associated with CRISPR—but not the double-strand cuts. As such, they give researchers new ways to interrogate and manipulate gene function. Possibilities include CRISPR interference (CRISPRi) and CRISPR activation (CRISPRa)…

Continue Reading New Techniques and Complex Models

Bioconductor – aCGH

    This package is for version 2.9 of Bioconductor; for the stable, up-to-date release version, see aCGH. Classes and functions for Array Comparative Genomic Hybridization data. Bioconductor version: 2.9 Functions for reading aCGH data from image analysis output files and clone information files, creation of aCGH S3 objects for…

Continue Reading Bioconductor – aCGH

How to load Seurat Object into WGCNA Tutorial Format

As far as I can find, there is only one tutorial about loading Seurat objects into WGCNA (ucdavis-bioinformatics-training.github.io/2019-single-cell-RNA-sequencing-Workshop-UCD_UCSF/scrnaseq_analysis/scRNA_Workshop-PART6.html). I am really new to programming so it’s probably just my inexperience, but I am not sure how to load my Seurat object into a format that works with WGCNA’s tutorials (horvath.genetics.ucla.edu/html/CoexpressionNetwork/Rpackages/WGCNA/Tutorials/)….

Continue Reading How to load Seurat Object into WGCNA Tutorial Format