Tag: UGENE

Validation of Oxford nanopore sequencing for improved New World Leishmania species identification via analysis of 70-kDA heat shock protein | Parasites & Vectors

Akhoundi M, Downing T, Votypka J, Kuhls K, Lukes J, Cannet A, et al. Leishmania infections: molecular targets and diagnosis. Mol Aspects Med. 2017;57:1–29. Article  PubMed  Google Scholar  Akhoundi M, Kuhls K, Cannet A, Votypka J, Marty P, Delaunay P, et al. A historical overview of the classification, evolution, and…

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Accepted ugene 49.1+dfsg-1 (source all amd64) into unstable

—–BEGIN PGP SIGNED MESSAGE—– Hash: SHA512 Format: 1.8 Date: Tue, 12 Dec 2023 14:49:53 +0100 Source: ugene Binary: ugene ugene-data ugene-dbgsym Architecture: source all amd64 Version: 49.1+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team <debian-med-packag…@lists.alioth.debian.org> Changed-By: Pierre Gruet <p…@debian.org> Description: ugene – integrated bioinformatics toolkit ugene-data – required…

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Are there any primers that are specifically designed for the molecular identification of Fusarium species?

Which region of the rRNA is used for synethsizing primers for species identification?5 answersThe region of the rRNA used for synthesizing primers for species identification is the mitochondrial 12S rRNA gene. This gene segment is commonly targeted in PCR-based methods for species identification and taxonomic classification. It has been used…

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Quantification of rare somatic single nucleotide variants by droplet digital PCR using SuperSelective primers

Primary samples and nucleic acid extraction A cohort of 48 patients diagnosed with advanced adenoma (AAD), defined by size > 20 mm, or colorectal carcinoma (CRC) were collected between 2013 and 2016. The study was approved by the institutional ethics committee of Hospital General Universitario de Alicante (Ref. CEICPI2013/01), and written informed consent…

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Genetic diversity and phylogenetic analyses of Asian lineage Zika virus whole genome sequences derived from Culex quinquefasciatus mosquitoes and urine of patients during the 2020 epidemic in Thailand

Hayes, E. B. Zika virus outside Africa. Emerg. Infect. Dis. 15(9), 1347–1350. doi.org/10.3201/eid1509.090442 (2009). Article  PubMed  PubMed Central  Google Scholar  Faye, O. et al. Molecular evolution of Zika virus during its emergence in the 20th century. PLoS Negl. Trop. Dis. 8(1), e2636. doi.org/10.1371/journal.pntd.0002636 (2014). Article  CAS  PubMed  PubMed Central  Google…

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Bioinformatics Software Market to Witness Robust Expansion by 2030

The Bioinformatics Software Market research report provides all the information related to the industry. It gives the market’s outlook by giving authentic data to its client which helps to make essential decisions.  It gives an overview of the market which includes its definition, applications and developments, and manufacturing technology. This…

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Index of /~psgendb/birchhomedir/local/pkg/ugene/data/cmdline

Name Last modified Size Description Parent Directory   –   align-clustalo.uwl 2019-09-24 01:05 3.0K   align-clustalw.uwl 2019-09-24 01:05 5.1K   align-kalign.uwl 2019-09-24 01:05 2.8K   align-mafft.uwl 2019-09-24 01:05 2.7K   align-tcoffee.uwl 2019-09-24 01:05 3.1K   align-to-reference.uwl 2019-09-24 01:05 3.1K   align.uwl 2019-09-24 01:05 2.7K   convert-msa.uwl 2019-09-24 01:05 1.4K  …

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How to remove chimera from 16S Sanger contigs

How to remove chimera from 16S Sanger contigs 0 Hi, I have a bunch of 16S Sanger sequences, and I used UGENE to trim and edit sequences, then generated the contig using CAP3 embedded in UGENE. I submitted most of the sequences in the GenBank and received their accessions, but…

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Molecular Organization and Intragenomic Variability of Intergenic Spacer of 5S rRNA Genes in Colobanthus quitensis

Androsiuk, P., Chwedorzewska, K., Szandar, K., and Giełwanowska, I., Genetic variability of Colobanthus quitensis from King George Island (Antarctica), Pol. Polar Res., 2015, vol. 36, pp. 281–295. doi.org/10.1515/popore-2015-0017 Article  Google Scholar  Bennett, M.D., Smith, J.B., and Smith, R.I.L., DNA amounts of angiosperms from the Antarctic and South Georgia, Environ. Exp….

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Bioinformatics Software Market Size, Growth | Global Report [2023-2030]

Introducing Our Latest Bioinformatics Software Market Research Report Unveiling In-Depth Analysis of Industry Trends, Growth, and Opportunities: The Bioinformatics Software Market 2023-2030 | research report provides a detailed analysis of the market’s various types [Knowledge Management Tools, Bioinformatics Platforms, Bioinformatics Services] and applications [Medical bioinformatics, Animal bioinformatics, Agricultural bioinformatics, Scholars…

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Bioinformatics Software Market Landscape: Trends, Innovations, and Top Players Strategic Outlook 2030

“Bioinformatics Software Market” Size, Share, Growth Report 2023-2030 | No. of Pages: 105 | Report which offers an in-depth analysis Grounded on Applications (Medical bioinformatics, Animal bioinformatics, Agricultural bioinformatics, Scholars and microbial genomes), and Types (Knowledge Management Tools, Bioinformatics Platforms, Bioinformatics Services) and expected to Grow Annually By Magnificent (CAGR…

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Global Bioinformatics Software Market Size, Growth | Global Report [2023-2031]

Global “Bioinformatics Software Market” offers a detailed Report of |111 Pages| which is expected to witness remarkable growth in the coming years. The implementation of new technologies and innovative solutions will drive the market’s revenue generation and increase its market share by 2031 with Revenue by Type (Knowledge Management Tools,…

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Bioinformatics Software Market will reach USD Million 2030 (New Report) by Business Insights, Top Companies, consumption by Regional data

Bioinformatics Software Market (CAGR 2023 – 2030) |No. of pages: [105] | market size, share, and industry analysis, By Type [, Knowledge Management Tools, Bioinformatics Platforms, Bioinformatics Services, ,], Application [, Medical bioinformatics, Animal bioinformatics, Agricultural bioinformatics, Scholars and microbial genomes,], and regionhas seen significant growth and advancement due to…

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Bioinformatics Software Market Research | 2023-2030

The Bioinformatics Software Market Insights of 2023 is an extensive and comprehensive report that provides a complete analysis of the market’s size, shares, revenues, various segments, drivers, trends, growth, and development. The report also highlights the limiting factors and regional industrial presence that may affect the market’s growth trends beyond…

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Infection of sheep by Echinococcus multilocularis in Gansu, China: evidence from mitochondrial and nuclear DNA analysis | Infectious Diseases of Poverty

Craig PS, Hegglin D, Lightowlers MW, Torgerson PR, Wang Q. Echinococcosis: control and prevention. Adv Parasitol. 2017;96:55–158. Article  CAS  PubMed  Google Scholar  Deplazes P, Dinkel A, Mathis A. Molecular tools for studies on the transmission biology of Echinococcus multilocularis. Parasitology. 2003;127(Suppl):S53–61. Article  CAS  PubMed  Google Scholar  Deplazes P, Rinaldi L,…

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Bioinformatics Software Market: Latest Innovations 2023

PRESS RELEASE Published July 25, 2023 Latest Bioinformatics Software Market Dynamics and Innovations 2023: Market Segmentation by Types [Knowledge Management Tools, Bioinformatics Platforms, Bioinformatics Services], and Applications [Medical bioinformatics, Animal bioinformatics, Agricultural bioinformatics, Scholars and microbial genomes] with Growing CAGR. The Bioinformatics Software market has witnessed growth from USD million…

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kraken in windows

kraken in windows 0 Can we use kraken in windows? I am using Ugene sofware but unable to find exe file of kraken kraken • 69 views • link updated 2 hours ago by Ram 39k • written 2 hours ago by anasjamshed &utrif; 120 Login before adding your answer….

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DNA barcoding of black flies (Diptera: Simuliidae) in Indonesia | Parasites & Vectors

Adler PH, Takaoka H, Sofian-Azirun M, Chen CD, Suana IW. Evolutionary and biogeographic history of the black fly Simulium wayani (Diptera: Simuliidae) on the island of Timor. Acta Trop. 2019;193:1–6. Article  PubMed  Google Scholar  Adler PH, McCreadie JW. Black flies (Simuliidae). In: Adler PH, McCreadie JW, editors. Medical and veterinary…

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Best UGENE Alternatives (2023) upgrade your research

0 UGENE is a well-known, free, open-source bioinformatics program that is used a lot in teaching and reference. It works with Windows, Linux, and Mac, and it also has both online and self-hosted options. But the program doesn’t stand alone; there are more than 25 other options, each with its…

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Most Demanding Players, Share, Industry Analysis of Future Demand, Opportunities, Forecast and Growth Rate To 2030

PRESS RELEASE Published July 3, 2023 Complete Research on Bioinformatics Software Market: Help to gain Knowledge of industry peers, upcoming trend, scope and factor affecting growth and development by 2023-2030. The updated Global “Bioinformatics Software Market” report for 2023 delves into several crucial components that are essential to the market…

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Bioinformatics CV example + guide [Get top jobs]

Are you looking for your next opportunity in bioinformatics? Then you need a strong CV that showcases your relevant qualifications and experience in the field. In this guide, we’ll teach you how to create an impressive application that showcases your top achievements. You can also check out our bioinformatics CV…

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Bioinformatics Software Market Will Touch New Level in Upcoming Year

PRESS RELEASE Published May 29, 2023 Bioinformatics Software Market Analysis 2023 | by Product Type ( Knowledge Management Tools, Bioinformatics Platforms, Bioinformatics Services ), Application Type ( Medical bioinformatics, Animal bioinformatics, Agricultural bioinformatics, Scholars and microbial genomes, ), CAGR, Major Key Players are covered in this report by 360 Market…

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Clinical characteristics and host immunity responses of SARS-CoV-2 Omicron variant BA.2 with deletion of ORF7a, ORF7b and ORF8 | Virology Journal

Study cohorts This study was conducted in compliance with the Declaration of Helsinki and was approved by the Maoming People’s Hospital (Approval No. 2021-hs-43) and Dongguan Ninth People’s Hospital (Approval No. 2022-8). COVID-19 was confirmed based on positive results of reverse transcription-polymerase chain reaction (RT-PCR) of nasopharyngeal samples. Whole blood…

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Bioinformatics Software Market is set to experience a significant growth rate

PRESS RELEASE Published May 5, 2023 Global Bioinformatics Software Market Report – Production and Consumption Professional Analysis (Impact of COVID-19)  , Covid 19 Outbreak Impact research report added by Report Ocean, is an in-depth analysis of market characteristics, size and growth, segmentation, regional and country breakdowns, competitive landscape, market shares,…

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Bioinformatics Software Market | Latest Valuation Report with Factual Forecast to 2030

PRESS RELEASE Published April 24, 2023 Global Bioinformatics Software Market research report offers a detailed analysis of valuable insight into the market state and future predictions until 2030. The report uses both qualitative and quantitative data to highlight key market trends, challenges, competition, industry developments, and emerging opportunities. Additionally, the…

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Bioinformatics Software Industry Market to Eyewitness Massive Growth by 2031

Bioinformatics Software Industry market research report is an expert’s analysis that mainly includes companies, types, applications, regions, countries, etc. Also, the reports give an analysis on sales, revenue, trade, competition, investment, and forecast. Bioinformatics Software Industry market research covers COVID-19 impacts on the upstream, midstream and downstream industries. Also, this…

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Bioinformatics Software Market Size 2023 Top Insights by Growth Factors, Demand, Developments and Regions Forecast to 2028

PRESS RELEASE Published March 12, 2023 Latest “Bioinformatics Software Market” Research Report gives statistical analysis on various growth opportunities, future scope, top industry development plans and key regions update with leading players. Some top players Are – Genomespace, InterMine, .NET Bio, GenGIS, PathVisio, GenePattern | 105 Pages Report “Final Report…

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Bioinformatics Software Industry Market Is Thriving Worldwide

JC Market Research recently introduced a new title on Bioinformatics Software Industry Market 2022 and forecast 2031 from its database. The Bioinformatics Software Industry report provides a study with an in-depth overview, describing the product/industry scope and elaborates market outlook and status (2022-2031). The Bioinformatics Software Industry report is curated after in-depth…

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Harnessing the Potential of Bioinformatics Software Market Forecast 2023-2027 and In-Depth 105 Pages Report Outlining Future Growth Prospects

PRESS RELEASE Published February 14, 2023 The growing demand for Bioinformatics Software has provided a major boost to the Global Bioinformatics Software Market as more people are shifting their preferences to this growing sector. The market is expected to keep rising at a high CAGR and reach values of high…

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Mapping a small number of contigs to a reference subsequence

Mapping a small number of contigs to a reference subsequence 1 Hello, Is there a method or a tool to align/map a small number of contigs (obtained with Canu) to a subsequence extracted from a reference genome ? For example,in a similar way to reads to reference assembly (using bwa…

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U.S Bioinformatics Software Market 2022

Bioinformatics Software Market Report: 2022-2027 Bioinformatics Software Market (Newly published report) which covers Market Overview, Future Economic Impact, Competition by Manufacturers, Supply (Production), and Consumption Analysis The market research report on the global Bioinformatics Software industry provides a comprehensive study of the various techniques and materials used in the production…

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Bioinformatics Software Market Outlook: Post Covid-19 Scenario by 2029

California (United States) – The Bioinformatics Software Market Research Report is a professional asset that provides dynamic and statistical insights into regional and global markets. It includes a comprehensive study of the current scenario to safeguard the trends and prospects of the market. Bioinformatics Software Research reports also track future…

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Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene blaNDM

Wu, W. et al. NDM metallo-β-lactamases and their bacterial producers in health care settings. Clin. Microbiol. Rev. 32, e00115–18 (2019). Yong, D. et al. Characterization of a new metallo-β-lactamase gene, bla NDM-1, and a novel erythromycin esterase gene carried on a unique genetic structure in Klebsiella pneumoniae sequence type 14…

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Index of /~psgendb/local/pkg/ugene-33.0/tools/cutadapt-1.7.1/cutadapt

Name Last modified Size Description Parent Directory   –   __init__.py 2019-09-24 01:16 579   __init__.pyc 2020-02-08 14:55 1.0K   _align.so 2019-09-24 01:16 203K   _qualtrim.so 2019-09-24 01:16 70K   _seqio.so 2019-09-24 01:16 256K   adapters.py 2019-09-24 01:16 12K   adapters.pyc 2020-02-08 14:55 14K   align.py 2019-09-24 01:16 1.1K  …

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Haplotype Diversity of Mongolian and Tuvan Goat Breeds (Capra hircus) Based on mtDNA and Y-Chromosome Polymorphism

1 Zonaed Siddiki, A., Miah, G., Islam, M.S., et al., Goat genomic resources: the search for genes associated with its economic traits, Int. J. Genomics, 2020, 5940205. doi.org/10.1155/2020/5940205 2 Amills, M., Capote, J., and Tosser-Klopp, G., Goat domestication and breeding: a jigsaw of historical, biological and molecular data with missing…

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