Tag: Unipept

Biodiversity analysis of metaproteomics samples with Unipept: a comprehensive tutorial

Metaproteomics has become a crucial omics technology for studying microbiomes. In this area, the Unipept ecosystem, accessible at https://unipept.ugent.be, has emerged as an invaluable resource for analyzing metaproteomic data. It offers in-depth insights into both taxonomic distributions and functional characteristics of complex ecosystems. This tutorial explains essential concepts like Lowest…

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Error executing process > consensus_classification in NanoCLUST

Error executing process > consensus_classification in NanoCLUST 1 Hello, I’m trying to run NanoCLUST with my 16S sequence data. I run it on a Linux ubuntu 20.04 machine. When I use the command: nextflow run main.nf -profile docker –reads “*.fastq” –db “db/16S_ribosomal_RNA” –tax “db/taxdb/” I get the following terminal output:…

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Unipept Desktop computer: A quicker, More robust Metaproteomics Results Examination Tool.

In addition we describe the key components driving the actual translation of such circRNAs. In addition, many of us summarize the key functions with the circRNA-encoded proteins in both physiological as well as pathological situations. Lastly, many of us go over the actual therapeutic potential as well as difficulties within…

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Unipept Desktop Construction of Targeted Reference Protein Databases for Metaproteogenomics Analyses

dataset posted on 2023-07-17, 18:41 authored by Pieter Verschaffelt, Alessandro Tanca, Marcello Abbondio, Tim Van Den Bossche, Tibo Vande Moortele, Peter Dawyndt, Lennart Martens, Bart Mesuere Unipept Desktop 2.0 is the most recent iteration of the Unipept Desktop tool that adds support for the analysis of metaproteogenomics datasets. Unipept Desktop…

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filtering host and gut material #340

Pdawyndt Pierre RouzĂ© yesterday hinted on a possible application of the Unipept Shotgun Metagenomics/Metaproteomics Analysis Pipeline. They are sequencing a marine organism (forgot about the name), but after DNA extraction and sequencing, they end up both with DNA reads and transcript data from the marine organism they want to sequence…

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