Tag: UniProtKB

Proteomics | EMBL-EBI Training

Feedback and help Who is this course for? An undergraduate degree in a life science subject or some background knowledge on the composition of proteins, would be an advantage. What will I achieve? By the end of the course you will be able to: Describe what is meant by…

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UniProtKB/SwissProt variant VAR_085098

Sequence information Variant position:  322 The position of the amino-acid change on the UniProtKB canonical protein sequence. Protein sequence length:  360 The length of the canonical sequence. Location on the sequence:   IEVEQALAHPYLEQYYDPSD  E PIAEAPFKFDMELDDLPKEK The residue change on the sequence. Unless the variant is located at the beginning or at the end of…

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Index of /refseq

Name Last modified Size Parent Directory – B_taurus/ 2020-02-25 11:45 – D_rerio/ 2020-02-25 11:46 – FunctionalElements/ 2020-08-13 18:17 – H_sapiens/ 2020-02-25 11:39 – LocusLink/ 2007-04-27 08:08 – MANE/ 2021-06-16 13:56 – M_musculus/ 2020-07-17 15:40 – R_norvegicus/ 2020-02-25 11:44 – S_scrofa/ 2020-02-25 11:44 – TargetedLoci/ 2016-08-09 11:27 – X_tropicalis/ 2020-02-25 11:45…

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UniProtKB/SwissProt variant VAR_083726

Sequence information Variant position:  468 The position of the amino-acid change on the UniProtKB canonical protein sequence. Protein sequence length:  805 The length of the canonical sequence. Location on the sequence:   GTLPFTYMLEKWRWMVFKGE  I PKDQWMKKWWEMKREIVGVV The residue change on the sequence. Unless the variant is located at the beginning or at the end of…

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UniProtKB/SwissProt variant VAR_084538

Sequence information Variant position:  28 The position of the amino-acid change on the UniProtKB canonical protein sequence. Protein sequence length:  492 The length of the canonical sequence. Location on the sequence:   PPAIGPYYENHGYQPENPYP  A QPTVVPTVYEVHPAQYYPSP The residue change on the sequence. Unless the variant is located at the beginning or at the end of…

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UniProtKB/SwissProt variant VAR_084474

Sequence information Variant position:  205 The position of the amino-acid change on the UniProtKB canonical protein sequence. Protein sequence length:  496 The length of the canonical sequence. Location on the sequence:   ERSLDTLLEAVESRGGVPGG  C VLVPRADLRLGGQPAPPQLL The residue change on the sequence. Unless the variant is located at the beginning or at the end of…

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UniProtKB/SwissProt variant VAR_082259

Sequence information Variant position:  4075 The position of the amino-acid change on the UniProtKB canonical protein sequence. Protein sequence length:  4374 The length of the canonical sequence. Location on the sequence:   GQDAGGLLREWYMIISREMF  N PMYALFRTSPGDRVTYTINP The residue change on the sequence. Unless the variant is located at the beginning or at the end of…

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Is there any tutorial to access Gene Ontology (GO) terms in R?

Is there any tutorial to access Gene Ontology (GO) terms in R? 0 Hi, I was wondering if we can access GO terms in R using QuickGO or other tools. I have a huge list of UniprotKB for which I need to create a data set of GO terms and…

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Is the Ensembl GRCh38 genome assembly more up to date than the UniProtKB online database?

Dear all, I am working with a list of Ensembl accession codes for a desired group of proteins. I have downloaded the protein annotations related to the genome assembly GRCH38. I fetched the genomic coordinates from UniProtKB API service using the Ensembl accession codes. The service provide a protein annotation…

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Accessing Uniprot Info Via Python

Accessing Uniprot Info Via Python 2 Does anyone here regularly access uniprot info using python? If so how? I tried downloading github.com/boscoh/uniprot through github but was unable to figure out the installation. What does everyone here use? python uniprot • 8.7k views • link updated 3 hours ago by Nick…

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