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Tag: usr
Topic Modelling with LDA: A Comprehensive Guide for Students
2/8/24, 5:59 PMtopic-modelling-lda.ipynb – Colaboratory 1/5# This Python 3 environment comes with many helpful analytics libraries installed # It is defined by the kaggle/python Docker image: # For example, here’s several helpful packages to load import numpy as np # linear algebra import pandas as pd # data processing, CSV…
Creating valid json file for pytorch model – Models
I built a simple clip model using pytorch and uploaded to huggingface manually, I want to use it with transformer library, I added a config json file but when i try to load to model it throws not valid json file error: from transformers import CLIPProcessor, CLIPModel model_identifier=”umarigan/turkish_clip” processor =…
Debian — File list of package slurm-wlm-mysql-plugin/sid/riscv64
/usr/lib/riscv64-linux-gnu/slurm-wlm/accounting_storage_mysql.so /usr/lib/riscv64-linux-gnu/slurm-wlm/jobcomp_mysql.so /usr/share/doc/slurm-wlm-mysql-plugin/changelog.Debian.gz /usr/share/doc/slurm-wlm-mysql-plugin/copyright /usr/share/lintian/overrides/slurm-wlm-mysql-plugin /usr/lib/riscv64-linux-gnu/slurm-wlm/accounting_storage_mysql.so /usr/lib/riscv64-linux-gnu/slurm-wlm/jobcomp_mysql.so /usr/share/doc/slurm-wlm-mysql-plugin/changelog.Debian.gz /usr/share/doc/slurm-wlm-mysql-plugin/copyright /usr/share/lintian/overrides/slurm-wlm-mysql-plugin Read more here: Source link
mysql – Trying to Authenticate the Slurm User via Keys Instead of Password Using the pam Plugin on MariaDB
mysql – Trying to Authenticate the Slurm User via Keys Instead of Password Using the pam Plugin on MariaDB – Database Administrators Stack Exchange Stack Exchange Network Stack Exchange network consists of 183 Q&A communities including Stack Overflow, the largest, most trusted online community for developers to learn, share their…
132releng-armv7-default][misc/py-pytorch] Failed for py39-pytorch-2.1.1_1 in configure
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/ampere3/data/132releng-armv7-default/1dd4264fe4a8/logs/py39-pytorch-2.1.1_1.log Build URL: pkg-status.freebsd.org/ampere3/build.html?mastername=132releng-armv7-default&build=1dd4264fe4a8 Log: =>> Building misc/py-pytorch build started at Tue Dec 19…
‘Resources’ object has no attribute ‘tmpdir’
Snakemake error AttributeError: ‘Resources’ object has no attribute ‘tmpdir’ 0 I have built a Snakemake pipeline which has been designed for paired-end reads. I have made a trial with single-end reads, and got this error. I am not sure it is related to the change of reads design, and to…
Accessing Snowflake with R Studio via ODBC on SPCS | by Gabriel Mullen | Snowflake | Dec, 2023
In a previous post, I was able to deploy a R Studio container into Snowpark Container Service. This allows me to run R code directly in Snowflake, but I still need to connect to Snowflake to grab data. So when I attempted to use the dbConnect syntax from the original…
How to entry user-selectable page with Dockerlized Jupyterhub – JupyterHub
I am currently building JupyterHub on single machine using Docker, and I want users to access a page where they can select the Docker image they want upon logging in, like the below page. But whenever I log in using any account, the system always redirects me to the JupyterLab…
jupyterhub/jupyterhub image fails (`alembic.ini` missing) by default
I’m not sure what the intented behavior of the jupyterhub/jupyterhub image is, but currently it fails to startup by default without additional mounted configuration files etc via a docker run docker.io/jupyterhub/jupyterhub:main command. docker run docker.io/jupyterhub/jupyterhub:main [I 2023-10-02 10:16:39.360 JupyterHub app:3076] Running JupyterHub version 5.0.0.dev [I 2023-10-02 10:16:39.360 JupyterHub app:3106] Using…
Binary location in Linux .deb package – General
The Linux .deb package contains the rstudio binary in a non-standard location, namely /usr/lib/rstudio/rstudio. This is problematic for packaging RStudio, because package maintainers need to copy (or symlink) the binary to a standard location like /usr/bin or /usr/local/bin. Arch Linux is currently hitting this issue. RStudio is available in the…
ftbfs and autopkgtest regression with htslib 1.19
Source: cyvcf2 Version: 0.30.22-1 Severity: important Tags: ftbfs upstream With the introduction of htslib 1.19 in experimental, cyvcf2 is experiencing test failures at package build time and autopkgtest time. The relevant part of the error looks like: cyvcf2/tests/test_reader.py …………………Fatal Python error: Aborted Current thread 0x00007fa7874de040 (most recent call first): File “/<<PKGBUILDDIR>>/.pybuild/cpython3_3.11_cyvcf2/build/cyvcf2/tests/test_reader.py”, line 285…
Tljh-reload stuck in infinite loop of Hub not ready: (HTTP status 502) InsecureRequestWarning: Unverified HTTPS request is being made to host while setting up azuread OAuthenticator – The Littlest JupyterHub – Jupyter Community Forum
Sure,the tljh-config file looks like: and the logs show this:Dec 15 18:18:45 JupyterHub python3[2671]: File “/usr/lib/python3.6/importlib/init.py”, line 126, in import_moduleDec 15 18:18:45 JupyterHub python3[2671]: return _bootstrap._gcd_import(name[level:], package, level)Dec 15 18:18:45 JupyterHub python3[2671]: File “”, line 994, in _gcd_importDec 15 18:18:45 JupyterHub python3[2671]: File “”, line 971, in _find_and_loadDec 15 18:18:45…
installing R studio server on Ubuntu 22.04 LTS occour dependency problems : Package libclang-dev is not installed – General
I am installing the R studio server on my Ubuntu22.04 LTS, when sudo gdebi rstudio-server-2023.09.1-494-amd64.deb error occours Reading package lists… Done Building dependency tree… Done Reading state information… Done Reading state information… Done RStudio Server RStudio is an integrated development environment (IDE) designed to support multiple languages, including both R…
CP2K QMMM Calculation seems to randomly crash
Dear all, I have encountered a very disturbing phenomena. My system is fairly simple: One Na+ in water (up to 800 water molecules). I generated the system using tleap. The plan is the following: Since full semi empirical MD with XTB is costly for 801 atoms, I tried to calculate…
[llvm-bugs] [Bug 75428] clang crash when build IPEX code.
Issue 75428 Summary clang crash when build IPEX code. Labels clang Assignees Reporter xuhancn The error msg: “`cmd Stack dump: 0. Program arguments: /usr/bin/clang++ -DAT_PARALLEL_OPENMP=1 -DUSE_C10D_GLOO -DUSE_DISTRIBUTED -DUSE_RPC -DUSE_TENSORPIPE -Dintel_ext_pt_cpu_EXPORTS -I/home/xu/conda_spaces/ipex_cpu/frameworks.ai.pytorch.ipex-cpu -I/home/xu/conda_spaces/ipex_cpu/frameworks.ai.pytorch.ipex-cpu/csrc/include -I/home/xu/conda_spaces/ipex_cpu/frameworks.ai.pytorch.ipex-cpu/csrc/cpu -I/home/xu/conda_spaces/ipex_cpu/frameworks.ai.pytorch.ipex-cpu/csrc/cpu/aten -I/home/xu/conda_spaces/ipex_cpu/frameworks.ai.pytorch.ipex-cpu/csrc/cpu/utils -I/home/xu/conda_spaces/ipex_cpu/frameworks.ai.pytorch.ipex-cpu/csrc/cpu/jit -I/home/xu/conda_spaces/ipex_cpu/frameworks.ai.pytorch.ipex-cpu/csrc/jit -I/home/xu/conda_spaces/ipex_cpu/frameworks.ai.pytorch.ipex-cpu/csrc/utils -I/home/xu/conda_spaces/ipex_cpu/frameworks.ai.pytorch.ipex-cpu/third_party/ideep/mkl-dnn/include -I/home/xu/conda_spaces/ipex_cpu/frameworks.ai.pytorch.ipex-cpu/csrc/cpu/tpp -I/home/xu/conda_spaces/ipex_cpu/frameworks.ai.pytorch.ipex-cpu/third_party/libxsmm/include -I/home/xu/conda_spaces/ipex_cpu/frameworks.ai.pytorch.ipex-cpu/build/Release/csrc/cpu/csrc/cpu/cpu_third_party/ideep/mkl-dnn/include -I/home/xu/conda_spaces/ipex_cpu/frameworks.ai.pytorch.ipex-cpu/third_party/ideep/include -I/home/xu/anaconda3/envs/ipex_cpu/include/python3.12 -I/home/xu/anaconda3/envs/ipex_cpu/include -I/home/xu/anaconda3/envs/ipex_cpu/lib/python3.12/site-packages/torch/include/torch/csrc/api/include -I/home/xu/conda_spaces/ipex_cpu/frameworks.ai.pytorch.ipex-cpu/third_party/ideep/mkl-dnn/src/../include -isystem /home/xu/anaconda3/envs/ipex_cpu/lib/python3.12/site-packages/torch/include -fPIC…
How To Install slurm-doc on Rocky Linux 8
In this tutorial we learn how to install slurm-doc on Rocky Linux 8. slurm-doc is Slurm documentation Introduction In this tutorial we learn how to install slurm-doc on Rocky Linux 8. What is slurm-doc Documentation package for Slurm. Includes documentation and html-based configuration tools for Slurm. We can use yum…
LP pseudo-atom is not supported
Hi, I want to perform MMPBSA for complex file Command: gmx_MMPBSA -O -i mmpbsa.in -cs md_100.tpr -ct md_center.xtc -ci index.ndx -cg 1 13 -cp topol.top -o FINAL_RESULTS_MMPBSA.dat -eo FINAL_RESULTS_MMPBSA.csv Error: [INFO ] Starting gmx_MMPBSA v1.6.2 [INFO ] Command-line gmx_MMPBSA -O -i mmpbsa.in -cs md_100.tpr -ct md_center.xtc -ci index.ndx -cg 1…
How does the cull values get used in the jupyerhub helm chart – JupyterHub
Shi_Jin December 12, 2023, 4:48am 1 First of all, everything is working and I am just puzzled at how it works. According to github.com/jupyterhub/zero-to-jupyterhub-k8s/blob/f11f8ea8ea857917f59b7f9a1b79a9570e21e622/jupyterhub/values.yaml#L653-L668, I am able to specify my own cull values like cull: timeout: 600 every: 60 users: true adminUsers: true And when I installed the jupyterhub helm…
Script Error using TRAVIS.Core.pl script within TRAVIS transcriptome viral scanner
Script Error using TRAVIS.Core.pl script within TRAVIS transcriptome viral scanner 0 Hi, I’m new to bioinformatics, and I’m trying to run the TRAVIS Transcriptome virus scanner on my sequences. When running the Core script, I see this error message pop up. Is this a script error that I should report…
ubuntu – Medaka: unrecognized command ‘tools’ and samtools not found
When trying to run medaka_consensus in ubuntu, I am getting the following error. I installed into a virtualenv to run on ubuntu. (medaka) ubuntu:~/medaka$ medaka_consensus -i combined.fastq -d curated.fasta -t -o ~/medaka 10 -m r941_sup_plant_g610 TF_CPP_MIN_LOG_LEVEL is set to ‘3’ [main] unrecognized command ‘tools’ Attempting to automatically select model version….
Bug#1058454: prody: autopkgtest regression on i386
Source: prody Version: 2.3.1+dfsg-3 Severity: serious Tags: sid trixie User: debi…@lists.debian.org Usertags: regression Hi Maintainer The autopkgtest of prody 2.3.1+dfsg-3 is failing when tested with numpy 1:1.24.2-2 [1]. I’ve copied what I hope is the relevant part of the log below. Regards Graham [1] ci.debian.net/packages/p/prody/testing/i386/ 345s =================================== FAILURES =================================== 345s ______________________ TestANMResults.testHessianSymmetry ______________________ 345s 345s self = <prody.tests.dynamics.test_enms.TestANMResults testMethod=testHessianSymmetry> 345s 345s…
Cannot install PyTorch on Orin AGX, with JP 5.0.2 – Jetson Orin NX
gbetsos December 12, 2023, 7:32pm 1 I have a custom Orin AGX board with L4T 35.1.0 and JetPack 5.0.2GA. I followed all steps from page: Installing PyTorch for Jetson Platform export TORCH_INSTALL=https://developer.download.nvidia.com/compute/redist/jp/v502/pytorch/torch-1.13.0a0+d0d6b1f2.nv22.10-cp38-cp38-linux_aarch64.whl $ python3 -m pip install –upgrade pip; $ python3 -m pip install aiohttp numpy==’1.19.4′ scipy==’1.5.3′ $ export “LD_LIBRARY_PATH=/usr/lib/llvm-8/lib:$LD_LIBRARY_PATH”;…
cryptanalysis – SAGEMATH FAILS to compute Difference Distribution Table for rectangular SBOX of logical AND, I don’t know why
I was being paranoid about some calculations I did so I started review one by one with the aid of software. Considere the rectangular SBOX = [0,0,0,1], as you may see this is the SBOX for AND or at least I wanted it to be so. I computed its LAT…
pytorch-cluster: FTBFS: ImportError: Failed to load PyTorch C extensions:
Source: pytorch-cluster Version: 1.6.1-2 Severity: serious Justification: FTBFS Tags: trixie sid ftbfs User: lu…@debian.org Usertags: ftbfs-20231212 ftbfs-trixie Hi, During a rebuild of all packages in sid, your package failed to build on amd64. Relevant part (hopefully): > debian/rules clean > dh clean –buildsystem pybuild > dh_auto_clean -O–buildsystem=pybuild > I: pybuild…
2024 Hyundai Kona Electric pricing goes for value
Hyundai has announced US pricing for the all-new 2024 Hyundai Kona Electric. The 2024 Hyundai Kona Electric, a significant design update with a larger cabin and cargo area than the previous generation, will come in three trim levels: SE, SEL, and the range-topping Limited. Hyundai is known for equipping even…
MetaSPAdes genome assembly (shotgun metagenome singleend) – usegalaxy.org support
Busrak December 11, 2023, 3:31pm 1 Hi friends, Metagenomic single end raw data with cut adapt‘Maximum error rate 0.3’Match times: 1Minimum overlap length:3minimum lenght: 15Max N: 0.3Max expected errors: 30 parameters.Then I aligned the host genome with gallus gallus with BBmap tool. I want to Assembly unmapped read. However, MetaSPAdes…
PyTorch for JetPack 6.0DP – Jetson Orin Nano
I see that a PyTorch wheel is available for JetPack 6.0DP:developer.download.nvidia.cn/compute/redist/jp/v60dp/pytorch/ However the installation instructions seem to be out of date: NVIDIA Docs Installing PyTorch for Jetson Platform – NVIDIA Docs This guide provides instructions for installing PyTorch for Jetson Platform. The following packages are not generally available for Ubuntu…
Building sagemath 10.2 on Fedora 38
Hi!, I have successfully build sagemath 10.1 on a Fedora 38 computer but now, when a I try to build sagemath 10.2 in the same computer, I have a lot of errors in Cythonizing files The first one is: [ 19/557] Cythonizing sage/arith/rational_reconstruction.pyx Error compiling Cython file: ———————————————————— … …
Pytorch installation error – General Topics and Other SDKs
Hi ,i have upgrade my cuda from 11,4 to 12.2 using the following steps:wget developer.download.nvidia.com/compute/cuda/repos/ubuntu2204/arm64/cuda-keyring_1.1-1_all.debsudo dpkg -i cuda-keyring_1.1-1_all.debsudo apt-get updatesudo apt-get -y install cudasudo gedit ~/.bashrcexport PATH=/usr/local/cuda-12.2/bin${PATH:+:${PATH}}export LD_LIBRARY_PATH=/usr/local/cuda-12.2/${LD_LIBRARY_PATH:+:${LD_LIBRARY_PATH}}source ~/.bashrc after that i am ablr=e to clone the pytorch using the following steps: git clone –recursive –branch v2.1.1 github.com/pytorch/pytorch export USE_NCCL=0…
ncs v2.5.0 linker error when setting CONFIG_BOOTLOADER_MCUBOOT – Nordic Q&A – Nordic DevZone
Hello, I currently have an app using nRF Connect SDK v2.5.0. To enable FOTA I set CONFIG_NCS_SAMPLE_MCUMGR_BT_OTA_DFU and CONFIG_BOOTLOADER_MCUBOOT in my prj.conf (following the documentation instructions). After this building the app fails during linking for 3 different undefined references: [275/280] Linking C executable zephyr/zephyr_pre0.elf FAILED: zephyr/zephyr_pre0.elf zephyr/zephyr_pre0.map : && ccache /home/q/app/zephyr_workspace/toolchains/7795df4459/opt/zephyr-sdk/arm-zephyr-eabi/bin/arm-zephyr-eabi-gcc…
Gromacs 2023.3 on Apple M3 chip – User discussions
GROMACS version: 2023.3GROMACS modification: No Hi folks I know that there have been several threads on running Gromacs with Apple M1 and M1 or M2 chips (e.g. Error compiling Gromacs 2023’s checks on Mac M2), but I recently got a MacBook Pro with the M3 chip, so I was interested…
Installation error Gromacs 2023.3 – User discussions
GROMACS version:2023.3GROMACS modification: NoHere post your questionI am trying to install the Cuda version of Gromacs. However, I am getting the following error after executing cmake .. -DGMX_BUILD_OWN_FFTW=ON -DREGRESSIONTEST_DOWNLOAD=ON -DGMX_GPU=CUDA -DCUDA_TOOLKIT_ROOT_DIR=/usr/local/cuda. Error : [ 98%] Linking CXX executable …/…/…/bin/argon-forces-integration/bin/ld: /home/saikat/softwares/gromacs-2023.3/build/lib/libgromacs.so.8: undefined reference to srot_’ /bin/ld: /home/saikat/softwares/gromacs-2023.3/build/lib/libgromacs.so.8: undefined reference to strsm_’collect2:…
Charmm36-jul2022.ff – User discussions – GROMACS forums
GROMACS version:GROMACS modification: Yes/NoHere post your question I am trying to generate amylin 2L86.top using CHARMM36-jul2022.ff and TIP3P. Amylin has 37 residues but the last NH2 is considered as residue 38. Although AMBERsb-star-ILDN.ff works with 38 resiues”, Charmm36-jul2022 does not work (see below):Fatal error:Residue type ‘NH2’ not found in residue…
Cannot connect to the server, what am I missing? – JupyterHub
The hub on the host severed directly on my machine (not via docker image). I run the jupyterhub with command arg –debug, and got the terminal infomation as follows: root@DESKTOP-L60P4Q8:~/my_docker/main# jupyterhub –debug -f ../jupyterhub_config.py [D 2023-12-07 23:00:23.417 JupyterHub application:908] Looking for ../jupyterhub_config in /root/my_docker/main [D 2023-12-07 23:00:23.417 JupyterHub application:929] Loaded…
ServerApp.iopub_data_rate_limit – Zero to JupyterHub on Kubernetes
escader December 6, 2023, 12:43pm 1 Hello. I deployed jupyterhub using helm chart v.2.0.0 and jupyterhub version 3.4.6. I get an error when doing a task. !!! I tried to set the jupyter notebook parameter –NotebookApp.iopub_data_rate_limit=100000000 when building docker, but I get ‘iopub_data_rate_limit’ has moved from NotebookApp to ServerApp. I…
Slurm REST API in AWS ParallelCluster
This post was contributed by Sean Smith, Sr HPC Solution Architect, and Ryan Kilpadi, SDE Intern, HPC AWS ParallelCluster offers powerful compute capabilities for problems ranging from discovering new drugs, to designing F1 race cars, to predicting the weather. In all these cases there’s a need for a human to…
sequence alignment – BioPython bootstrap is not reliable?
I think this is a bug. It seems to work if you do this, creating an equivalent Alignment object instead of a MultipleSeqAlignment to give the bootstrap step: from Bio.Align import Alignment alignment2 = Alignment(list(alignment)) consensus_tree = bootstrap_consensus(alignment=alignment2, times=50, tree_constructor=constructor, consensus=majority_consensus) bootstrap_consensus calls bootstrap_trees, which makes however many randomly shuffled…
tensorflow – CuDNN using wrong CUDA version
I’m re-doing my CUDA/CuDNN setup on a new profile on Ubuntu 22.04.3 because Keras raised an error with libcublasLT I couldn’t fix. For project compatibility, I need to use TF 12.12 with CUDA 11.8 and CuDNN 8.6. I’m working on a machine with multiple CUDA versions already installed. $ cd…
How to use Nextflow to call scripts from different environments?
How to use Nextflow to call scripts from different environments? 0 I have the following conda environments: wf-preprocess_env wf-assembly_env Each environment has unique dependencies installed. I have 3 scripts: preprocess.py which I use with wf-preprocess_env environment assembly.py and assembly-long.py which I use with wf-assembly_env How can I use Nextflow to…
Sorted bam files are empty after sorting them from bam
Sorted bam files are empty after sorting them from bam 0 Hi, I have been working with all my DNA analysis files in parallels but I got to a point where I had about 15 files get stuck on one step. Specifically, I notice something is wrong because the files…
Calculate GC content for entire chromosome
If you’re comfortable using Python, I’ve created a script that calculates the GC content and GC-skew for each contig, scaffold, or chromosome in a fasta file. This is specifically designed for generating data for a circos plot. To use the script, make sure you have Biopython installed in your conda…
Issues with setting up z2jh with nbgrader – JupyterHub
Hello,I’m trying to deploy z2jh with nbgrader. here is the information about courses courses_data = [ { “name”:”course101″, “instructors”: [“instructor1”], “grader”: “grader-course101”, “docker_image_instructors”: “path/to/image”, “students”: [“student1”], “docker_image_students”: “path/to/image” }, { “name”: “course123”, “instructors”: [“instructor2”], “grader”: “grader-course123”, “students”: [“student1”], “docker_image_instructors”: “path/to/image”, “docker_image_students”: “path/to/image” } ] For each course I have a…
Panic: Could not run ‘torchvision::roi_pool’ with arguments from the ‘CUDA’ backend – Jetson Nano
Hi, Team! I have such errors, when I run my code in docker container: root@de87551d73cf:/app/src# ./main WARN[0032] CUDA is valid WARN[0044] CUDA is valid INFO[0044] Forwarding… [W TensorImpl.h:1156] Warning: Named tensors and all their associated APIs are an experimental feature and subject to change. Please do not use them for…
sagemath crashes on start (output in messagem body)
Package: sagemathVersion: 9.5-6Severity: importantFile: /usr/bin/sage Dear Maintainer, I can’t start sage on console. Starting it, I get the following: $ sage┌────────────────────────────────────────────────────────────────────┐│ SageMath version 9.5, Release Date: 2022-01-30 ││ Using Python 3.11.6. Type “help()” for help. │└────────────────────────────────────────────────────────────────────┘ Error in sys.excepthook:Traceback (most recent call last):File “/usr/lib/python3.11/pathlib.py”, line 1251, in is_dirreturn S_ISDIR(self.stat().st_mode)^^^^^^^^^AttributeError: ‘str’…
Bam files generated with STAR cause a segmentation fault core dump error when used with another tool
I am mapping RNA-Seq data using STAR, using multi-sample two-pass mapping. I first mapped all samples with one-pass then concatenated their SJOut files and filtered junctions. I launched the second mapping by using this SJOut file. I used this command to generate genome : ` /home/STAR-2.7.10b/bin/Linux_x86_64/STAR \ –runThreadN 10 \…
linux – How to install sox for PyTorch audio?
I want to run PyTorch code on Linux. I start a virtual machine on AWS with AMI Deep Learning PyTorch, but, surprisingly, PyTorch is not installed. So I run: python3 -m pip install torch torchaudio When I load a WAV file, I get this error: RuntimeError: Couldn’t find appropriate backend…
140releng-powerpc64le-quarterly][misc/py-pytorch] Failed for py39-pytorch-2.0.1 in configure
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/foul2/data/140releng-powerpc64le-quarterly/84b4661ec108/logs/py39-pytorch-2.0.1.log Build URL: pkg-status.freebsd.org/foul2/build.html?mastername=140releng-powerpc64le-quarterly&build=84b4661ec108 Log: =>> Building misc/py-pytorch build started at Sun Dec 3…
140releng-powerpc64le-quarterly][biology/cytoscape] Failed for cytoscape-3.6.1 in build
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/foul2/data/140releng-powerpc64le-quarterly/84b4661ec108/logs/cytoscape-3.6.1.log Build URL: pkg-status.freebsd.org/foul2/build.html?mastername=140releng-powerpc64le-quarterly&build=84b4661ec108 Log: =>> Building biology/cytoscape build started at Sat Dec 2…
RStudio doesn’t work on Debian 12 with R version 4.3.2 – General
Hello, From the download website, it seems RStudio support Debian 12. I have installed R 4.3.2 R version 4.3.2 (2023-10-31) — “Eye Holes”Copyright (C) 2023 The R Foundation for Statistical ComputingPlatform: x86_64-pc-linux-gnu (64-bit) R is free software and comes with ABSOLUTELY NO WARRANTY.You are welcome to redistribute it under certain…
Why is DMRcate not available for Bioconductor version 3.18?
Why is DMRcate not available for Bioconductor version 3.18? 0 @daniel-e-weeks-10677 Last seen 22 hours ago Pittsburgh, Pennsylvania, United States… According to the Bioconductor web page for DMRcate, it looks like it is available for Bioconductor version 3.18 but this installation fails: > BiocManager::install(“DMRcate”) Bioconductor version 3.18 (BiocManager 1.30.22), R…
r-bioc-phyloseq 1.22.3-1
/usr/ root:root 0o755 /usr/lib/ root:root 0o755 /usr/lib/R/ root:root 0o755 /usr/lib/R/site-library/ root:root 0o755 /usr/lib/R/site-library/phyloseq/ root:root 0o755 /usr/lib/R/site-library/phyloseq/CITATION text/plain root:root 0o644 606 bytes /usr/lib/R/site-library/phyloseq/data/ root:root 0o755 /usr/lib/R/site-library/phyloseq/data/datalist text/plain root:root 0o644 44 bytes /usr/lib/R/site-library/phyloseq/data/enterotype.RData application/x-xz root:root 0o644 190.7 KB /usr/lib/R/site-library/phyloseq/data/esophagus.RData application/x-xz root:root 0o644 1.8 KB /usr/lib/R/site-library/phyloseq/data/GlobalPatterns.RData application/x-xz root:root 0o644 425.4 KB /usr/lib/R/site-library/phyloseq/data/soilrep.RData application/x-xz root:root 0o644 104.9 KB /usr/lib/R/site-library/phyloseq/DESCRIPTION text/plain…
AutoDock Vina 1.2.0: new docking methods, expanded force field, and Python bindings
J Chem Inf Model. Author manuscript; available in PMC 2023 Nov 28. Published in final edited form as: PMCID: PMC10683950 NIHMSID: NIHMS1947068 Jerome Eberhardt aDepartment of Integrative Structural and Computational Biology, Scripps Research, La Jolla, 92037, California, USA Diogo Santos-Martins aDepartment of Integrative Structural and Computational Biology, Scripps Research, La…
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When I use jupyter lab, there are several kernels I can choose: root@DESKTOP-L60P4Q8:~/arcta/live2# jupyter kernelspec list Available kernels: julia-1.9 /root/.local/share/jupyter/kernels/julia-1.9 mojo-jupyter-kernel /root/.local/share/jupyter/kernels/mojo-jupyter-kernel rust /root/.local/share/jupyter/kernels/rust python3 /usr/local/share/jupyter/kernels/python3 But when I use jupyterhub, there is only one kernel I can choose: How can I setup the jupyterhub_config, so that I can choose…
nrfConnect 2.5.0: mbedTLS fails to compile (calloc()) – Nordic Q&A – Nordic DevZone
Hi there: we’ve just updated from nrfConnect 2.3.0 to nrfConnect 2.5.0 and mbedTLS (which seems to have been modified in nrfConnect 2.5.0) now fails to link (in platform.c) because it needs and is unable to find calloc(): /home/arm_embedded_gcc-10-2020-q4-major/bin/ld.bfd: modules/mbedtls/libmbedTLSBase.a(platform.c.obj):/home/nrfconnectsdk-v2.5.0/modules/crypto/mbedtls/library/platform.c:56: undefined reference to `calloc’ As you can see, we are just compiling…
Quast Genome assembly Quality (Galaxy Version 5.2.0+galaxy1) – usegalaxy.org support
Busrak November 29, 2023, 9:55am 1 Hi dear galaxy family, When I put my metagenome single read Megahit assembly data into Quast, I encounter the following error code. How can I solve this problem? Assembly_with_MEGAHIT_on_data_658 /usr/local/opt/quast-5.2.0/metaquast.py –single /jetstream2/scratch/main/jobs/53997042/inputs/dataset_f68c8b4a-bea0-4985-8324-4c64cdbe4d6d.dat –labels Assembly_with_MEGAHIT_on_data_658 -o outputdir –max-ref-num 50 –m 822: Quast on data 196…
systemd autopkgtest regression on arm64 and s390x on mantic
Is seems the container fails to boot. From a bad run: 9109s autopkgtest [10:39:17]: test tests-in-lxd: [———————– 9145s 2023-11-28T10:39:50Z INFO Waiting for automatic snapd restart… 9259s lxd 5.19-8635f82 from Canonical** installed 9288s Creating autopkgtest-prepare-jhI 9475s Retrieving image: metadata: 100% (323.81MB/s) Retrieving image: rootfs: 1% (3.53MB/s) <SNIP> Retrieving image: rootfs: 100%…
[slurm-users] Autodetect of nvml is not working in gres.conf
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Help! RStudio starts to a blank screen after update; clean install worked, but not after time machine backup. – RStudio IDE
Error Information: Description of issue – After updating to OS Sonoma, RStudio is a blank window. I only see the name of the toolbar. There are no options in the toolbar either, it says empty. R app works fine. Attempted steps taken to fix –Reinstalled appsReinstalled OS system sonoma (didn’t…
PyTorch 2.1 compatibility with CUDA 12.3
llama fails running on the GPU.Traced it to torch! Torch is using CUDA 12.1.Tried multiple different approaches where I removed 12.1 to make it use 12.3 downgraded the Nvidia driver. No joy! All help is appreciated. Running on a openSUSE tumbleweed.PyTorch Version: 2.1.1CUDA Version: 12.1CUDA Available: False | NVIDIA-SMI 545.29.06…
Species coverage in the NCBI protein NR database ?
Hi Biostars, I am currently trying to build a Eukaryote version of the NCBI NR database and I am not really sure that I fully understand how the NR is implemented. Here is the code that I’m using to do so : #!/usr/bin/bash ############## # DOWNLOAD FULL NR ############## baseURL=”https://ftp.ncbi.nlm.nih.gov/blast/db/”…
Building Pytorch for Conda from source with GLIBCXX_USE_CXX11_ABI=1
GdMacmillan (Gordon MacMillan) November 26, 2023, 4:17pm 1 Before I begin, I’ve checked the topics similar to this one and they all have linking issues and PR’s that are outdated. I am attempting to compile the libtorch binaries and build pytorch from source with GLIBCXX_USE_CXX11_ABI=1 The reason for this, I…
main-powerpc64le-default][misc/py-pytorch] Failed for py39-pytorch-2.1.1 in configure
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/foul2/data/main-powerpc64le-default/p5b346a1c0cc2_sfb51ddb20d/logs/py39-pytorch-2.1.1.log Build URL: pkg-status.freebsd.org/foul2/build.html?mastername=main-powerpc64le-default&build=p5b346a1c0cc2_sfb51ddb20d Log: =>> Building misc/py-pytorch build started at Fri Nov 24…
Compiling Deep-md with GROMACS – User discussions
GROMACS version: 2020.2GROMACS modification: Yes/NoI was trying to install Deep-md with GROMACS following the link1.6. Install GROMACS with DeepMD — DeePMD-kit documentation. To do this, I have followed the link to install Deep-MD: 1.2. Install from source code — DeePMD-kit documentationHere I have successfully completed the 1.2.1 ( install-the-python-interface) and…
Rstudio crashes just before producing a brms model – General
Hello, I am trying to run a brms model with 20000 iterations. After many hours of simulations, and just before being done, Rstudio crashes without any warning. The model compiles successfully with 1000 iterations and, sometimes, with 10000 iterations but several attempts to run the model with 20000 iterations or…
[slurm-users] Dynamic MIG Question
Hello All, I am currently working in a research project and we are trying to find out whether we can use NVIDIAs multi-instance GPU (MIG) dynamically in SLURM. For instance: – a user requests a job and wants a GPU but none is available – now SLURM will reconfigure a…
Slurm setup – Software & Operating Systems
mmk November 22, 2023, 2:51pm #1 Hi all, I’m attempting to set up a simple cluster with one head node / front end, and 16 compute nodes. All nodes are identical. I have seemingly successfully setup slurmctld on the head node, and slurmd on all compute nodes. “sinfo” from the…
132amd64-default][science/votca] Failed for votca-2023 in package
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/beefy16/data/132amd64-default/5b346a1c0cc2/logs/votca-2023.log Build URL: pkg-status.freebsd.org/beefy16/build.html?mastername=132amd64-default&build=5b346a1c0cc2 Log: =>> Building science/votca build started at Tue Nov 21…
How to check if the EXTRA-FIX package exists in my installed lammps and how to install it – LAMMPS Beginners
Dear All, I am using LAMMPS (23 Jun 2022) I need to use Extra-fix package.I have used “make ps” command to figure out if the package exists or not, but I got the error make: ” *** No rule to make target `ps’. Stop. ” , which means I am…
140releng-armv7-default][misc/py-pytorch] Failed for py39-pytorch-2.1.0 in configure
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/ampere3/data/140releng-armv7-default/d5268d5f7157/logs/py39-pytorch-2.1.0.log Build URL: pkg-status.freebsd.org/ampere3/build.html?mastername=140releng-armv7-default&build=d5268d5f7157 Log: =>> Building misc/py-pytorch build started at Sun Nov 19…
Materials studio to lammps data file – Materials Project
I’ve created a structure of water droplet falling into Cu surface using material studio. I’m trying to convert material studio file using msi2lmp into lammps lmp data file. But, I’m getting this: Running msi2lmp v3.9.9 / 05 Nov 2018 Forcefield: Class IForcefield file name: /usr/share/lammps/frc_files/cvff.frcOutput is recentered around geometrical centerOutput…
[Kernel-packages] [Bug 2007050] Autopkgtest regression report (initramfs-tools/0.142ubuntu15.1)
All autopkgtests for the newly accepted initramfs-tools (0.142ubuntu15.1) for mantic have finished running. The following regressions have been reported in tests triggered by the package: initramfs-tools/0.142ubuntu15.1 (armhf) Please visit the excuses page listed below and investigate the failures, proceeding afterwards as per the StableReleaseUpdates policy regarding autopkgtest regressions [1]. people.canonical.com/~ubuntu-archive/proposed-…
MAJOR Computational Biology Research Lab
MAJOR Computational Biology Research Lab (MCBRL) uses computer science algorithms to solve biology related problems, bioinformatics software development and develop bioinformatics cloud computing platforms or services for handling and analyzing large-scale biological data.. The workflow of hdWGCNA analysis for Single-cell Spatial Transcriptomics data RNA-seq Schematicsc/nRNA-seq Schematic ” RNA-seq Schematic 空间转录共表达网络分析流程…
Nccl_external fails while trying to compile pytroch from source – torch.compile
Hello, I’m trying to compile pytorch from source and encountering the following build error. $ CC=gcc-10 CXX=g++-10 python setup.py develop … [5995/6841] Linking CXX executable bin/HashStoreTest Warning: Unused direct dependencies: /home/netfpga/research/collective/pytorch/build/lib/libc10.so /home/netfpga/anaconda3/envs/pytorch_base/lib/libmkl_intel_lp64.so.1 /home/netfpga/anaconda3/envs/pytorch_base/lib/libmkl_gnu_thread.so.1 /home/netfpga/anaconda3/envs/pytorch_base/lib/libmkl_core.so.1 /lib/x86_64-linux-gnu/libdl.so.2 /home/netfpga/anaconda3/envs/pytorch_base/lib/libgomp.so.1 [5996/6841] Performing build step for ‘nccl_external’ FAILED: nccl_external-prefix/src/nccl_external-stamp/nccl_external-build nccl/lib/libnccl_static.a /home/netfpga/research/collective/pytorch/build/nccl_external-prefix/src/nccl_external-stamp/nccl_external-build /home/netfpga/research/collective/pytorch/build/nccl/lib/libnccl_static.a cd /home/netfpga/research/collective/pytorch/third_party/nccl/nccl &&…
Installation of DESeq2 package while utilizing free Posit cloud – General
Help! I’m trying to install DEseq2 to perform differential gene expression analysis R Studio. I’m using the free R Studio on Posit Cloud. R Sudio version is 4.3.2, BiocManager is 3.1.8. This is my issue with the error: library(BiocManager)Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.2 (2023-10-31)BiocManager::install(“DESeq2”)‘getOption(“repos”)’ replaces Bioconductor standard repositories,…
DESeq2 installation failures
DESeq2 installation failures 0 Help! I’m trying to install DEseq2 to perform differential gene expression analysis R Studio. I’m using the free R Studio on Posit Cloud. R Sudio version is 4.3.2, BiocManager is 3.1.8. This is my issue with the error: library(BiocManager) Bioconductor version 3.18 (BiocManager 1.30.22), R 4.3.2…
Trying to spawn pods in other namespace – Zero to JupyterHub on Kubernetes
Hello manics, thank you for your quick response and the tips on further debugging!In the default setting everything works fine, I can even use a profile as long as I dont use the kubespawner_override.namespace option. Here are the logs from the profile+namespace setting with the debug logging:Hub: [I 2023-11-16 19:58:45.827…
Pytorch network -> onnx -> tensorrt performance(run frequency) question – Jetson AGX Xavier
hi, dear Nvidia engineers,I have been working on a state of art neural network and tried to deploy it on jetson xavier . one major consideration is the realtime perforamance. I tried the int8, cuda-graph, method and it gives some performance indeed, but it still doesnot meet a realtime requirement….
slurmctld.log not available after logrotate
Package: slurmctld Version: 22.05.8-4+deb12u1 Severity: normal Tags: patch X-Debbugs-Cc: alois.schlo…@gmail.com Dear Maintainer, After migrating the slurmctld from debian11/slurm20 to a host with debian12/slurm22, /var/log/slurm/slurmctld.log was rotated at midnight, to /var/log/slurm/slurmctld.log.1.gz but no /var/log/slurm/slurmctld.log was generated. syslog of logrotate showed this log message: 2023-11-17T00:00:01.825407+01:00 l74 logrotate[3441040]:…
Bug#1056027: rsass: autopkgtest regression
Source: rsass Version: 0.28.2+20231021-3 Severity: serious ci.debian.net/data/autopkgtest/testing/amd64/r/rsass/39898469/log.gz … 54s autopkgtest [11:12:12]: test rust-rsass:@: /usr/share/cargo/bin/cargo-auto-test rsass –all-targets –all-features –no-fail-fast — –skip core_functions::math::log::base::one_fuzzy –skip values::calculation::calc::constant::e::equals_max_precision –skip values::calculation::calc::constant::pi::equals_max_precision 54s autopkgtest [11:12:12]: test rust-rsass:@: [———————– 54s crate directory not found: /usr/share/cargo/registry/rsass—all-targets 54s autopkgtest [11:12:12]: test rust-rsass:@: ———————–] 54s autopkgtest [11:12:12]: test rust-rsass:@: – -…
DESeq2 design with unbalance data and a multifactor design
Dear all, I am doing a DGEA with DESeq2 and data imported with tximport. I have an unbalanced dataset as reported below. With the counts and the metadata that I have I would like to answer different questions. I would like to look at the differential expressed genes between the…
DESeq2 with unbalanced dataset and multifactor design
Dear all, I am doing a DGEA with DESeq2 and data imported with tximport. I have an unbalanced dataset as reported below. With the counts and the metadata that I have I would like to answer different questions. I would like to look at the differential expressed genes between the…
macos – M2pro Mac opencv c++ failed,but it worked normally serveral days ago
the error are as follows: g++ main.cpp -std=c++14 `pkg-config –cflags –libs opencv4` ./a.out dyld[73360]: Library not loaded: /opt/homebrew/opt/mbedtls/lib/libmbedcrypto.14.dylib Referenced from: <8C2E2CF9-054E-300F-BDE7-3DE52F848638> /opt/homebrew/Cellar/librist/0.2.7_3/lib/librist.4.dylib Reason: tried: ‘/opt/homebrew/opt/mbedtls/lib/libmbedcrypto.14.dylib’ (no such file), ‘/System/Volumes/Preboot/Cryptexes/OS/opt/homebrew/opt/mbedtls/lib/libmbedcrypto.14.dylib’ (no such file), ‘/opt/homebrew/opt/mbedtls/lib/libmbedcrypto.14.dylib’ (no such file), ‘/usr/local/lib/libmbedcrypto.14.dylib’ (mach-o file, but is an incompatible architecture (have ‘x86_64’, need ‘arm64’)), ‘/usr/lib/libmbedcrypto.14.dylib’ (no…
Workbench project sharing issue: system error 13 (Permission denied) – NFSv4 on Ubuntu 20.04 – RStudio IDE
Hi there,I have a new Posit Workbench installation on Ubuntu 20.04 and I’m attempting to replicate what I had on my old servers – project sharing working across an NFSv4 share which contains all my user home directories. Both the sharing machine and Workbench machine are running the same version…
Bug#1055848: cfgrib: autopkgtest regression
Source: cfgrib Version: 0.9.10.4-2 Severity: serious User: debi…@lists.debian.org Usertags: regression Hi Maintainer The upload of cfgrib 0.9.10.4-2 is failing its own autopkgtest [1]. I’ve copied what I hope is the relevant part of the log below. Regards Graham [1] ci.debian.net/packages/c/cfgrib/testing/amd64/ 80s autopkgtest [21:14:56]: test tryload: [———————– 80s Traceback (most recent call last): 80s File…
autopkgtest regression on arm64 and s390x
Source: python-sparse Version: 0.14.0-1 Severity: serious User: debi…@lists.debian.org Usertags: regression Hi Maintainer The upload of python-sparse 0.14.0-1 is failing its own autopkgtest on arm64 and s390x [1][2]. I’ve copied what I hope is the relevant part of the log below. Regards Graham [1] ci.debian.net/packages/p/python-sparse/testing/arm64/ [2] ci.debian.net/packages/p/python-sparse/testing/s390x/ 60s autopkgtest [15:18:15]: test command1: set -e ;…
Error in compiling lammps after interfacing with AENET
Dear Dr. Artrith and team, Greetings! I’m new to aenet. Thank you Dr. Artrith and team for develping aenet and opensourcing it. I downloaded USER-AENET and interfaced with lammps 4Feb2020-version. However, I’m getting the following error (complete error response attached ) when I compile the lammps using “make mpi”. Kindly…
[slurm-users] JobState of RaisedSignal:53 Real-time_signal_19; slurm 23.02.4
The user is launching a Singularity container for RStudio and the final option for –rsession-path does not exist. scontrol show job 420719JobId=420719 JobName=r2.sbatch UserId=ouruser(552199) GroupId=user(500) MCS_label=N/A Priority=1428 Nice=0 Account=ouracct QOS=xxx JobState=FAILED Reason=RaisedSignal:53(Real-time_signal_19) Dependency=(null) From slurmctld.log: [2023-11-10T11:40:20.569] _slurm_rpc_submit_batch_job: JobId=420719 InitPrio=1428 usec=272[2023-11-10T11:40:20.973] sched: Allocate JobId=420719 NodeList=node001 #CPUs=2 Partition=xxx[2023-11-10T11:40:21.143] _job_complete: JobId=420719 WTERMSIG 53[2023-11-10T11:40:21.144] _job_complete: JobId=420719 done I…
Gmx do_dssp -f md_0_1.xtc -s md_0_1.tpr -o ss.xpm – User discussions
bsana November 10, 2023, 8:13pm 1 GROMACS version:2023.3I get GROMACS this week and I have to do some command on a peptide of 8 amino acidit is my first time using gromacs the command line have been given by the instructor but no enough details about the lines. so i’m…
132arm64-default][science/votca] Failed for votca-2022.1_1 in build
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/ampere3/data/132arm64-default/d5268d5f7157/logs/votca-2022.1_1.log Build URL: pkg-status.freebsd.org/ampere3/build.html?mastername=132arm64-default&build=d5268d5f7157 Log: =>> Building science/votca build started at Fri Nov 10…
JupyterHub on Kubernetes cannot failed to cull user pods
I implemented JupyterHub using a Helm chart on a local Kubernetes cluster on VMware virtual machines. I want to cull users after they have been inactive for a while, but it seems not to work. This error log from the hub pod (pod named hub-545895f988-vmj2k) might be related: [W 2023-11-09…
compilation error WRF | WRF & MPAS-A Support Forum
V4.3.3 No git found or not a git repository, git commit version not available. Compiling: WRF_EM_CORE Linux bcm1 5.14.0-162.22.2.el9_1.x86_64 #1 SMP PREEMPT_DYNAMIC Thu Mar 30 17:01:52 UTC 2023 x86_64 x86_64 x86_64 GNU/Linux GNU Fortran (GCC) 11.2.0Copyright (C) 2021 Free Software Foundation, Inc.This is free software; see the source for copying…
PyTorch Model to detect Pneumonia using Snowpark Container Service and Snowflake ML Features | by Karuna Nadadur | Snowflake | Nov, 2023
Author : Karuna Nadadur Co Author : Murali Gandhirajan Healthcare Delivery is undergoing rapid changes and evolution as health systems and clinics adopt digital technologies to effectively serve patients. As digital technologies get widely deployed in the patient care delivery ecosystem, it generates vast amounts of patient data. Most of…
Real-time collaboration for jupyterhub – Zero to JupyterHub on Kubernetes
Hi there,I’ve been playing around with RTC extension on jupyterhub recently and I’ve been stuck at creating-collaboration-accounts for a while. It mentions This configuration code runs when jupyterhub starts up, so I included the example code block under hub.extraConfig.’myConfig.py’, then I got this error: TypeError: ‘LazyConfigValue’ object is not subscriptable….
Unhealthy hub pod, possible network problems? – Zero to JupyterHub on Kubernetes
We’re trying to resize (reduce) a z2jh running on an OpenStack Magnum-created k8s, and now seeing some problems with the hub pod, which may be related to networking. From the hub logs: [I 2023-11-07 17:59:20.318 JupyterHub app:1984] Not using allowed_users. Any authenticated user will be allowed. [D 2023-11-07 17:59:20.344 JupyterHub…
SparseArray unable to install on Bioc 3.18
SparseArray unable to install on Bioc 3.18 0 @f33be25c Last seen 6 hours ago United States I have been using DESeq2 now for several months and my code has been working just fine for my analysis. However today I was unable to load the DESeq package. It appears the issue…
Bug#1055414: bedtools: FTBFS on i386: “intersect” tool failure
Source: bedtools Version: 2.31.0+dfsg-1 Severity: serious Tags: ftbfs Justification: ftbfs Dear Maintainer, While making a routine metadata update on a Debian patch against bedtools, Salsa CI caught a build failure on i386[1] which I could reproduce multiple times in sid and in testing with the unmodified version of the package. [1]: salsa.debian.org/med-team/bedtools/-/jobs/4891166 The…
systemtap: autopkgtest regression: Pass 4: compilation failed. [man error::pass4]
Source: systemtap Version: 4.9-1 Severity: serious User: debi…@lists.debian.org Usertags: regression Dear maintainer(s), Your package has an autopkgtest, great. However, it fails since a couple of months. Can you please investigate the situation and fix it? I copied some of the output at the bottom of this report. The release team…
‘NoneType’ object has no attribute ‘utcoffset’
Source: undertime Version: 3.2.0 Severity: serious Tags: sid trixie User: debian…@lists.debian.org Usertags: regression Dear maintainer(s), Your package has an autopkgtest, great. However, it fails. Can you please investigate the situation and fix it? I copied some of the output at the bottom of this report. The release team has announced…
Container is gone after start – JupyterHub
Hi ! I try to mount a jupyterhub container. The server seems to run smoothly but cannot create a user notebook container (DockerSpawner). After a few seconds, the container disappears. Hereafter is my jupyterhub log (user: donzel): [D 2023-11-03 14:18:16.039 JupyterHub application:908] Looking for /srv/jupyterhub/jupyterhub_config in /srv/jupyterhub [D 2023-11-03 14:18:16.054…
140releng-armv7-default][misc/py-pytorch] Failed for py39-pytorch-2.0.1 in configure
You are receiving this mail as a port that you maintain is failing to build on the FreeBSD package build server. Please investigate the failure and submit a PR to fix build. Maintainer: y…@freebsd.org Log URL: pkg-status.freebsd.org/ampere3/data/140releng-armv7-default/08943441f26e/logs/py39-pytorch-2.0.1.log Build URL: pkg-status.freebsd.org/ampere3/build.html?mastername=140releng-armv7-default&build=08943441f26e Log: =>> Building misc/py-pytorch build started at Thu Nov 2…