Tag: viennaRNA

make PyPI package that does not include NUPACK or ViennaRNA

Before figuring out #12, an easier thing to implement would be a PyPI package that does not include NUPACK or ViennaRNA. This would slightly simplify the instructions for installation, even though it would remain necessary to install NUPACK and ViennaRNA to use most pre-packaged constraints. I recall that NUPACK has…

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Mirdeep2 Installation (Error In Make_Html.Pl)

Mirdeep2 Installation (Error In Make_Html.Pl) 1 Hi, I am trying to install mirdeep2. At the last step, I tested make_html.pl and error appeared as following: [liran@ip14-mp2 tools]$ make_html.pl Can’t locate PDF/API2.pm in @INC (@INC contains: /home/liran/tools/mirdeep2/lib64/perl5 /home/liran/tools/ViennaRNA-2.1.2/install_dir/lib64/perl5 /usr/local/lib64/perl5 /usr/local/share/perl5 /usr/lib64/perl5/vendor_perl /usr/share/perl5/vendor_perl /usr/lib64/perl5 /usr/share/perl5 .) at /home/liran/tools/mirdeep2/make_html.pl line 9. BEGIN failed–compilation…

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Bioconductor – GeneRfold

R for genes and sequences, using viennaRNA package (fold) Bioconductor version: 2.5 Package manipulating sequences with fold routines Author: Y. d’Aubenton-Carafa, A. Lucas & C. Thermes Maintainer: Antoine Lucas <lucas at cgm.cnrs-gif.fr> To install this package, start R and enter: source(“http://bioconductor.org/biocLite.R”) biocLite(“GeneRfold”) To cite this package in a publication, start…

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