Tag: VirtualBox

autodock vina on mac

autodock vina on mac 1 Hello everyone I am trying to download autodock vina on macOS but also I need to download mgltools but I need use virtual box that explaining on manuals of vina. But I dont know how use virtual box for installation to this program. I will…

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How to install slurm-drmaa-dev on Ubuntu 16.10 (Yakkety Yak)?

Quick installation of slurm-drmaa-dev: Step 1: Update system: sudo apt-get update Step 2: Install: slurm-drmaa-dev Ater updaing the OS run following command to install the packae: sudo apt-get install slurm-drmaa-dev Package Details Package: slurm-drmaa-dev Version: 1.0.7-1build4 Maintainer: Ubuntu Developers Home page: apps.man.poznan.pl/trac/slurm-drmaa Description: PSNC DRMAA for SLURM – devel PSNC…

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Should I Learn Docker to Run Command Line Bioinformatics Tool?

I work in a genomics team where we sometimes teach people from other labs how to run bioinfo command line tools in Linux. Almost all of them are Windows users and never experienced using Linux. We usually help them set up Linux in dual boot so that they can run…

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The R session exited with code 2 – RStudio IDE

A year ago after an update rstudio stopped working and it still isn’t working – the same issue, not even error message available (see report below). At that time I was getting all kinds of absolutely useless “help”, (f.e. support.posit.co/hc/en-us/articles/200488508/comments/10155655418135) where i was suggested resetting the user state but then…

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Error in make STAR

Error in make STAR 0 Hi everyone, I installed STAR on Debian12 (VirtualBox). I have a problem when running the make command. The output is like this $ make g++ -c -O3 -std=c++11 -fopenmp -D’COMPILATION_TIME_PLACE=”2023-08-25T17:42:59+01:00 :/home/huynhtp/software/STAR/source”‘ -D’GIT_BRANCH_COMMIT_DIFF=”On branch master ; commit 79affaae7d5e70221287762eab4e40679fad87f7 ; diff files: “‘ -pipe -Wall -Wextra STAR.cpp…

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Error in openning FastQC

Error in openning FastQC 0 Hi everyone, I’m a beginner in Bioinformatics. I’ve recently used Debian 12 (VirtualBox 7.01) to practice some tools for RNA-seq analysis. I have some problems when running FastqC and IGV on the operating system. I downloaded FastQC windows/linux zip file. The scripts executed to install…

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[slurm-users] Need to free up memory for running more than one job on a node

Hello, (This is my first time submitting a question to the list) We have a test-HPC with 1 login node and 2 computer nodes. When we submit 90 jobs onto the test-HPC, we can only run one job per node. We seem to be allocating all memory to the one…

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Install autodock on Ubuntu: sudo apt-get install autodock

Quick installation of autodock: Step 1: Update system: sudo apt-get update Step 2: Install: autodock Ater updaing the OS run following command to install the packae: sudo apt-get install autodock Package Details Package: autodock Version: 4.2.3-2 Maintainer: Ubuntu Developers Home page: autodock.scripps.edu/ Description: analysis of ligand binding to protein structure …

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How to transfer files from Windows to Linux?

How to transfer files from Windows to Linux? 1 To analyze RNAseq data, I have installed Oracle VM VirtualBox on Windows, and want to call my files, including RNAseq files, on Linux. I also installed PUTTY and WinSCP. And I follow the instructions below: sudo apt-get update sudo apt install…

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What specifications of laptop should I buy for bioinformatics?

Hello, I have a question regarding computer settings. The lab I belong to is currently in the process of setting up microbiome research, and is experiencing difficulties in purchasing a computer needed for BI analysis. Qiime2 analysis was performed by installing a virtual machine on a Windows computer with 16GB…

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JupyterHub Virtual Machines

JupyterHub packaged by Bitnami Virtual Machines Trademarks: This software listing is packaged by Bitnami. The respective trademarks mentioned in the offering are owned by the respective companies, and use of them does not imply any affiliation or endorsement. Bitnami Virtual Machines contain a minimal Linux operating system with JupyterHub installed…

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ALDEx2 Plugin Error – Community Plugin Support

Ms-Tai (Taiquitha T. Robins) July 19, 2022, 2:49am #1 Plugin error from aldex2:An error was encountered while running ALDEx2 in R (return code 1), please inspect stdout and stderr to learn more.Debug info has been saved to /tmp/qiime2-q2cli-err-4j7_h2at.log lizgehret (Liz Gehret) July 19, 2022, 5:15pm #2 Hi @Ms-Tai, Please include…

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[Bug 1786013] Autopkgtest regression report (linux-meta-oem-5.14/5.14.0.1021.18)

All autopkgtests for the newly accepted linux-meta-oem-5.14 (5.14.0.1021.18) for focal have finished running. The following regressions have been reported in tests triggered by the package: virtualbox-hwe/6.1.26-dfsg-3~ubuntu1.20.04.2 (amd64) virtualbox/6.1.26-dfsg-3~ubuntu1.20.04.2 (amd64) Please visit the excuses page listed below and investigate the failures, proceeding afterwards as per the StableReleaseUpdates policy regarding autopkgtest regressions…

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Cellranger untar error

Cellranger untar error 1 [SOLVED] Hello I am trying to install Cellranger. I downloaded the tar file from 10X genomics website and wanted to untar that. However I am getting bunch of these errors. It fails to untar. Below is the line I use for unpacking. I am on windows…

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