Tag: xpehh

Variant physical position must be monotonically increasing

ERROR: Variant physical position must be monotonically increasing 0 I want to calculate XPEHH for each SNP position. When I run the following command selscan –xpehh –vcf B10_beagle.vcf –vcf-ref D6_beagle.vcf –map MAP.map –threads 8 –out B10vsD6 I get this error ERROR: Variant physical position must be monotonically increasing Ch2:66 66…

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Positive selection population identification using xpehh

Positive selection population identification using xpehh 1 I am using Rehh package for identification of positively selected genes from our study. I am using the following script but confused with right reference. ies2xpehh( scan_pop1, scan_pop2, popname1 = NA, popname2 = NA, min_nhaplo = NA, standardize = TRUE, include_freq = FALSE,…

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